DreINT0131756 @ danRer10
Intron Retention
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28322263-28325592:-
Coord C1 exon
chr7:28325476-28325592
Coord A exon
chr7:28322386-28325475
Coord C2 exon
chr7:28322263-28322385
Length
3090 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GTGGATTCCTCCATTCTTAGACA
3' ss Score
5.04
Exon sequences
Seq C1 exon
ATATTGATGAGTGCTTTTTTGAGAGGACGTGTGACCACACTTGCGTAAACTCACCTGGCAGCTTCCAGTGTGTTTGCAACAAGGGCTACACTCTCTACGGACTTGCTCATTGTGGAG
Seq A exon
GTAAGGATACAAATAGATATTTTAAGAGTGTAAAAATTATGATTTTAAAAATAAAATCAAGGCGACAGACTTGCTAAAAGCCTGTGTCAACTCAAGTTTCTATATGTACGGTGGCCGAGAGAGCTTAAATGTCCTGCATGTTAAGAAAATACATGCAAATAAAAAACTACTTACACAATTTGTCAGTTTAGTTTAGTTTAGTTTAGCTGCTTTATTAATCCCACCAGAGGCAATTAAATTAGGGCAGTAGCATCATGATACAACAAACACAATAATTCATTCATTTTCTTTTCGGCTTAGTTCCTTTATTATTTATCTAGGATCGCCACAGCGGAATGAATCGCCAACTTATCCAGCATTTGTTTTATGCAGCTGATGCCTTTCCATCTGCAACCCATCTTTGGGAAACATTCATACACACTCATTCACTCTCATACACTACGGACCATTTAGCCTACCCAATTCATCTGTATCGCATGTCTTCGGACAGAGGGGGAAACCGGAGCACCCGGAGGAAACCCAAGCAAACACAGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCGAGGCTTGAACCAGCGACTTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCAATGTATCGCCCACAACAAACACATAAAGAGACAAATCACTTACAAACAATATTAAAAAACACAATCCAGGATGCTTCATAATAACTTCACACGGAAATATCTCCTGGCCCAGCTGGATATCGAACCAGCAACCTTTATGCTTTGAGGCGACAGTGCCAACCACTGAGCCACCTGTGCCACCAAGTCTGACCGTATATAGCATGCAAATTTTCACAACACATGCCAATACAGAGACACAGTGCAAATAGTGCAGATCGCAGTGAAAATGTGTTGGAGGACCGCAAAAAGTGATAAACCCAATCGCTTCCTGTTTAGAGTCAGTGGTGTAGTCGGAGATCTGAAAAGTGAGTTTTTGACCATTCGGTTCATTGTTTATGCATTTTTAGCCTTAGTAATCTGACAAATTGCACAAGTTTCAGAATTTAATATATACATGCAGTGAAAGATTATCCATAAAAATTCAAGACATTGGCTGACCTTATTGTTTATGCATTTTTAAAAGAGTATTTAAAAGAATAGTTTGTCCAAAAATACAAATTTGTTAACTTATGGTCCATATAAACCAGGGGTGGTCAACCCTGTTCCTGGAGATCGACCTTCCTAAAGAGTTCAGCTCAAACCATGATCAAACACACCTGAATCAATTAATTAGGACCTGAACAGCACTTGATAATTACAGGCAGGTGTGTTTAATATGGGTTGCAACGGAAATCTGCAGGAAGGTCAATCTCCAGGAACAGGGTTGGTCACCCCTGATATAAATAGATAATCAATAGTTCTCTGCACTGTATGTCAAAACAATAATAATAATAATAATAATACAGGCAAAACAAAATGAATACCTGTAACTCTTATGAAGCAAAACAGTGGGCTTGTGCATGAAACTTAGCACTAATTACAACATCATTACCTTTAAAGCTAAGTGCTAAACTCACACATGAGAGAACAAACTCTAAAAACAAATAAAAAAACTTGTCCTTATCGGCAACACAGTTGTTAAGTGTTTGGCACTTTTGCCTAACAGCTAGAAGGTCGCTGGTTTGAGTCTGGCTGGGTCAGTTGGCAATTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTTGTGTGGGTTTTCTCTGGGTGCTCAGGTTTCCCAAACAGTTCAAAGACATTGGTGAATTGAATTAGCTAAATTGGCCATAGTGTATGATTGTGAATGGGTGTCTATGGAAGTTTCCCCGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGTGTTAAACATATGCTGGATAAGTTGGTCGATCATTCCGCTGTGGTGACTCAAGATGAACAAAGGGTCTAAGCCGAGGAAAAAAATAAATGAATGAACTTGTCCTTAACTTGCATTGCAGTCTTAAGAAATTGTAAACTAACAGCATCAGCTCATGTGTGAATTTGCGCTAAAAATAAAAATCACATTATTTTTTCATCTATCTTACTTTGATTATATACTGCTACCCAGGTAACATGAGAATAACTGTCATATTTCCAAATTCCTCTGTTAGGCCAGCCTTCAAGAGGCTTTGATTGACCAGCTAACATAATGTACTGTGATTGGCGGATTGGCTCTATGTCACTACGCATTGCCCCTTTTGCGCTGTGTAAACAGCCGTATCAGTTTGCCTGAATTGGACAGAAAATGAAGAGCACACAGCTGAACCCAATGCTGGCTCTCAAAAATAAAATCTGACAAGTGTCTTTCACACGTGTTAATAAATAAGCATATGTAAGTAATAAGAAATGTACTTTTGCGAGTTTGTTATTTGAGGTGTAGAATGCAGTGAAAGCATCCGCATAGAGAGACACTGCTGAAGACTGTGGTTGTTTACAGCGATTTGACGGACAAATAAGAATTTGTAGTTAAATTGTTAGCCAAACAACATTTTTAATTGTTTACATCCTTGATTATGTTTTCGCTACAACATACTGTTAACACTAGAAACTGTACATGTAGTAATACTTACAGGTTGTGGCTCATAATCCACAGCTTCGTCGGTTGGATGAGTTAAGTGAATATAAACGTTAATATAAACATATATTTTCTGGAATATAATTAGAATTAAACTGGAAGCACTTCTCTCTTTAAGTTATGTTCTTTGGAATCCCAAATACAGAAACAGAACAAGCTCTGTGGAAATAGCAGCATTTGGACTGCATTTTAGCTTTCTCTGCTATAATATTACAGCGCCTCTGGCCACATCCCTTTACTGCGCGAGGTGTATGAACATGGTGATTGCACTTAGCCTGAAGCGTTTATGAATTTACCAAAGTATGATATCGTAGTGGACCATCCCTTGTCTGTGAAACTGTGTGATAGTATTTAAATAATTTCTCATGGGTCCCGGGAGCATTATTACAGAGGAAATGCAACTGAGAGTCTTGTTTACCTGAAATACGTCTTGATAGAAATCTGTTCCGTTTGTGGATTCCTCCATTCTTAG
Seq C2 exon
ACATAAACGAATGCAGCTTCAACAATGGAGGATGTGAGCACACCTGCGAGAACACCATGGGAAGCTTTGGGTGCCACTGCCGGACTGGTTATAAGCTGCACTGGAACAAGAAAGACTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362:ENSDART00000054366:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]