DreINT0132762 @ danRer10
Intron Retention
Gene
ENSDARG00000088143 | sema4gb
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb [Source:ZFIN;Acc:ZDB-GENE-111117-1]
Coordinates
chr12:33751890-33754907:-
Coord C1 exon
chr12:33754794-33754907
Coord A exon
chr12:33752045-33754793
Coord C2 exon
chr12:33751890-33752044
Length
2749 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GCTGATGTTCTGTCTTGTAGAGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
ATGGCGAGATGTACTCTGCCTCCCAGTATGAATTTCGTAACATCGCTGATATAAGGCGAAACTTTCCCTTCCCCAATTTGAGAATAGATGATTCCCCAACAAGATGGCTTTTAG
Seq A exon
GTTAGTAGAATGTTTTTTTACCCGGTCTTTGCTTGATGCCGAGAAGTGTTATTGTTTTCACCTGGTATTAACATGCATTCAGTGGAACCTTTTGTGACTACTTGCTTTTAGAGCCAAACTATATAACAAAAATCTCATATGTACACAATAAGGCTGTGCGATTTGGGGAAAATATCTAACTGCAAATTTTTGACAGATATTGCGATTTCAATTTGATTTGTGATTTAATTTTGTAGTCAAGCTTAAGCTCAATAATCTATATCTTGGCTTCTTACTACTAAAATGCAGCGAGTGTTACTTTTAAAAAAAGAAACTGAAAAGATATTAATTAATATTAATAACATTTATTCAAATTTGTTTTAAAATATTCAGAAATTTAACACTCATTTTTCCCTAGAGCAAGGAGTAAACACAAATAAAATGGCCGTACCTTTCTAAAAACAAGTTCAATTCAATTCAGGGAGATAATGTAACCTTTTATAAAAACAAAAGAATAATAATTATAAAAATACTAAACTAAAATGACTGCTCAGAGGCATATTGAAAAGTTCTGATTGGGCAGAATGAAAGTGAGCTCACTCAATTGGCTAGTAAGAGTGTCACACACAGACGGCGGTCACGCATTTGCTCTGGGTTGGGGAAATATTACATATATACTCCATATCGCAGCCTCTTGCGATAAGCTCTTACTGTGAAAGATTCAATTTCAATTAATCGCAAAGCCCTAATACACAATACAAGTCATCTCATATGCTAATAATGATATTGTCAACATATTGTGGATCATAAAAGTTGATCAAAGATGTCCCAAAACAAGAACGTGTATTGTTCTTGGTTTTAGGACAACTTTGATTAAAGATTTTTGATCCATTTCAAATCTTGACTTCTGTATATCACGATATAAGACCTTTTCTTTGTATTCAAACTATTTATAGTTTATATATATTGACCACATGGAAATTACTGTTTACTTTTTTACATTTTAAAGTATATACTCAAAAGTGTACTAATTATTTTTCTTAGTTTATTTAGAAATGTATGGCAAATGTTTGATTAAGAATGTAGAAATATAAAACACTTTTCAAATACTAATTATTACTGGTCTAACATAAAACATTGCTCAATAAAATGCAAAAGTAGATATTTTACTTTCTAGCCTGTAACTTTCTCACAATGCTGTTATTTAGGATTCTTTCTGCATCCCTGTGGTGGCATGGAAGATTGCATTCATCGAAATGATGAAAAGTATTACCATAAACAATGTATTTTGCGACACCACAAAAAAAATAATCATAAGGAATAATAATCATGATAAAGAATCGAGCATAATATGAAACAATACTTTTTAATTCACCCATACAATATATATTATATATCATACACCCATACATACATACATACATAAATACATACATACATACATACATACATACATATATAAATATATATGTATGTATGTGTATATTATGTGTGTGTGTGTGTGTATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATGATCCCACTTTATATTAAGTGTCCTTAACTGCTTGCATCAAAAATGTACTTACGTACATTGTACTTACTGTGTTCATAATGTATTTGAGAACACTTGGTGCTCTTGAGTTGAGATAGGGGTTGGGTTGTGAACAGGTTTGGTGGTATGGGTAGGTTTAAGTATGGGTTAAGGTGTAAGGGATGGTCAACAGTGTATTTACAAATGTAATTACAGAAGTTAATTGCAGATGTAATTAAATACAGGAATTCAATCAAGCTTAAGTACACAGTAAATACATGTATTTACACAATAATAACATTGTAACAACTTATTAATTCCTGTGTAAGTACATATTAGTTAAGGCCACTTAATACAAAGTGGGACCATATATATGTCTTGTCATCATGCCCAGCAAATCTCTTTCATTTAAAGATCTGTTCGAAGCAGGAATAATAATGATAACTGTAATGAACCTAAAAAAAAATGTACCATGATTGGTTGATTTTGCTTGACTAGGCTGTTTTCATTTGACAGAAGACTACCAGCACTCAGAATTTAGAATTTTGAGTGTCATATTTTTAGTAAAAGTGAAATATAGGACAAAGCCTGATTTTATTCTTAACAAGTGAGGAAACTAATTATAGAGCTGATATACAGGACTGTCCCGGAAAAAAAGGACATCTCATCACCCTTATAGTGCCAACATGCCAAACGTGAGTTGACAGAAGTGCTGAATTGCAGAGCTCATGCAAACATCCACAATGCTATTATAGGATCCTTTTTTCACATTGCTGTAATATTTATGGCATGTTTAGCTCATCTAGCAGTGGGTTGACTTTAGTACACTTACTAATATTAAAACGCTGCTCAAGTGTTTTGTACATATTTCAAAAAATACTTACTTGTGAATATATAGGATCTTTTGGCCTTTTTATTAATGTTTTTTTCTTGCTGTATCATCTGTCAGGCAAAAAAACAGCAACATCTGATTGCTTATTAAGAAATACCTTAGAATACTAAATCAATACATATGTTTACGTTTAATAAAAAGGAAGAATTCATATTAAAAGGAACATTTCCCACAAGAGTCACAATATTTTAATCAATAAACAGTGTACTCTGAACCTTCTCAGAGACACAGGAAGATCTGTAGGGCTCATAATTGGTCCGTTGTGGTGAAGGCAGCAACTAATGCTGATGTTCTGTCTTGTAG
Seq C2 exon
AGTCCGATTTTGTGGGCTCAGCGTTACTCAGAGAGAGCATCAACAGCTCCATCGGGGACGATGACAAACTCTACTTCTTCTTCACGGAGAGGAACACAGAACCGACGGCTTATTCCATCCAAACCAAAGTGGCCAGAGTGGCCCGTGTGTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088143:ENSDART00000131181:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(11.5=97.2)
A:
NA
C2:
PF0140314=Sema=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]