RnoINT0132994 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264746444-264746981:+
Coord C1 exon
chr1:264746444-264746557
Coord A exon
chr1:264746558-264746817
Coord C2 exon
chr1:264746818-264746981
Length
260 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGG
5' ss Score
3.39
3' ss Seq
AATAAATACTCAACCCACAGATG
3' ss Score
6.42
Exon sequences
Seq C1 exon
ATGGAGGCCTCTACACAGCCACGCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCCATGCACTGGCTCAATG
Seq A exon
GTTAGGAGATTGAGGTGCAGGATGACGGGTTGGGGGGAGTCTATTTCTTACTGTTTGTTCGTTTGGGCAGCTGACCATCCCATTTCCAAGCCTGCAGGTGAGCCTGTCCATTCCACACGTGTATTTTGGAAGACGGTTGGGGGGGGGGGGGCTGTGAGGAGGCGGGGTGTGTGGCTGTGAGGGGGCGAGGCTTGGGGCGAGGTTGTGGGAGAGAGCTTGACCTGTTTCATAAGCCACCTAAATAAATACTCAACCCACAG
Seq C2 exon
ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACCAGTGTAGTGGGTGACGATGACAAGATTTACTACTTCTTCATGGAGCGTGAGGAAGGTTCCAGCAGCTTCACTCAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
NA
C2:
PF0140314=Sema=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCCTCTACACAGCC
R:
TTGCACACACGGGCTACTCTA
Band lengths:
277-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]