GgaINT1024742 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22630061-22630478:-
Coord C1 exon
chr6:22630365-22630478
Coord A exon
chr6:22630228-22630364
Coord C2 exon
chr6:22630061-22630227
Length
137 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TCTCACTCCATTTCCCCCAGATG
3' ss Score
9.87
Exon sequences
Seq C1 exon
ATGGTGGATTGTACACAGCCACACGCTATGAGTTTCGGAGCCTCCCTGACATCCGGAGGAACCTGCACCAGCGGCCGCTGAAGACAGAGGAGTCCCCTCTGCACTGGCTGAATG
Seq A exon
GTAAAGGTGTCCCTGTCCCCCAGGATTGGTGCCTGGGCTTGTCCGGAGTGGTGTGCTGCAGGGGAAATCTGAGGCAGGGAGGGGCTGTGGGGACGTGGCGAGTTCCCAATTGCTACCTCTCACTCCATTTCCCCCAG
Seq C2 exon
ATGCCGAGTTTGTGGCCTCCATGCTGGTCCAGGAAAGCAAGGACAGTCTCGTGGGTGACGATGACAAAATCTATTACTTCTTCATGGAGCGAGCAGGCGAGGAGACCACGTCCTTCTTCGACAAGAGCCAGGTGGCTCGGGTGGCCCGGGTGGCCCGCGTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
NA
C2:
PF0140314=Sema=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGTACACAGCCACACG
R:
CCTGGCTCTTGTCGAAGAAGG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]