DreINT0133605 @ danRer10
Intron Retention
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44818573-44819036:+
Coord C1 exon
chr10:44818573-44818764
Coord A exon
chr10:44818765-44818841
Coord C2 exon
chr10:44818842-44819036
Length
77 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TATCTATTTCTGTTTAACAGCAG
3' ss Score
7.8
Exon sequences
Seq C1 exon
TCATGTATTGTACAGACCCGGGACATGTCGATCACTCCACACGCACACTCTCTGACCCCAAACTGCTAGTTGGCACCACCATCCAGTACAGCTGCACACCCGGATTCATCCTGCAGGGCGGCGCCACACTCACCTGCTATGGCCGAGAGCCCGGCACCCCGGTGTGGACATCCCACCTTCCACACTGCGTCT
Seq A exon
GTGAGTTCACTACAACAACACTGAAGCTCTCCTCACTCCCTCAGCTATTCATGACTCTATCTATTTCTGTTTAACAG
Seq C2 exon
CAGAAGAATCCGTGTCCTGTGAGAATCCCGGCCTTCCCGACAATGGCTACCAGATTCTGTCTAAAAGACTTTACCTTCCTGGAGAGTCTCTGACCTTCATGTGCTACCAGGGATATGAGCTTATCGGTGAAATGGCCATCAAGTGCATTCTGGGAAATCCTTCATTCTGGAGTGGACCATTGCCCCTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594:ENSDART00000172128:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTACAGCTGCACACC
R:
ATCTGGTAGCCATTGTCGGGA
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]