GgaINT0006826 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7352798-7353290:+
Coord C1 exon
chr15:7352798-7352989
Coord A exon
chr15:7352990-7353095
Coord C2 exon
chr15:7353096-7353290
Length
106 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGCTACGTGCTCCCTTCCAGCGG
3' ss Score
8.83
Exon sequences
Seq C1 exon
TTATGTACTGCACAGACCCAGGAGAGGTGGAGCACTCGACTCGCCTCATCTCCGACCCCGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAATCCTGGCTTCGTGCTGGAGGGCAGCTCACTGCTCACCTGCTACAGCCGTGAGACCGGGACTCCCATCTGGACCTCACGGCTCCCACACTGTGTCT
Seq A exon
GTGAGTGCTGCAGCCCTCCCCTGAGGCTCAGTGACAGCTCAGGAGCTGAACACCCAGCCTCCTTCCCTTCAGCCTTTGTCTCACCCTGCTACGTGCTCCCTTCCAG
Seq C2 exon
CGGAGGAGTCTCTGGCCTGTGACAACCCAGGGCTGCCAGAAAACGGCTACCAAATCCTCTACAAACGCCTCTACCTGCCCGGCGAGTCTCTGACCTTCATGTGCTATGAGGGCTTCGAGCTCATGGGGGAGGTGACCATCAAGTGCATACTGGGACAGCCGTCGCACTGGAGTGGGCCACTGCCCATCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACTGCACAGACCCAGGA
R:
TTGGTAGCCGTTTTCTGGCAG
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]