DreINT0136684 @ danRer10
Intron Retention
Gene
ENSDARG00000092989 | si:ch211-161n3.3
Description
si:ch211-161n3.3 [Source:ZFIN;Acc:ZDB-GENE-041210-102]
Coordinates
chr4:10960593-10962084:-
Coord C1 exon
chr4:10962028-10962084
Coord A exon
chr4:10961900-10962027
Coord C2 exon
chr4:10960593-10961899
Length
128 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
TGCTTTTTTTCTAATACCAGATT
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGAGTCCTGAGGATTATGGTGATCCAGATGAAAGGGAGTATGTGAGTGACATATTGG
Seq A exon
GTACGTTTTTACTTTCTCATTTTTTGTGATAATAACAGCTTATTTAAATTGACTGCTGCTATTGAGGAGTTCATACTAATACTTTTAAAAAGCTTATTGTGATTCAGTTGCTTTTTTTCTAATACCAG
Seq C2 exon
ATTATGATGATGTGGGGGAAGAACCAGAAAAACAGGAAGCAAATGGTTAACTCAGCCACACAGATTTTGTTTTGTTTATATATATATATATATATATATATATATACACACACACACACACACACACACACACACACACACACAGTATGTATAAGTACATGTAAGATACTATAAGAATAGTTACTATAAAAAATCTTCTTTTATTGATTTCTTTTTAATAATTTCATAACTTGCTCTTATGGCCTTTTCAAAATATTTAATTTTCTCTTTTCAGAAGTTTTTAGGATGTCATTTCATTTCAGTCATGCAGACATACTGTATCTATTTAGTAGAATTTATTTTCCACCTAACATTCAATCAGTTTTATACACCGTAATTTTGATTATCCCAGTCTTATTTTACAAAAATTTCACATTGTAAACATAGATTATTCTCATTGAATATACTGTAGACTCATTGGTGATGGACTTTTATATTTTGCTTAATAACCTAGGAATGTACTTTGAGAAATATGATGACAAACAGTGAACATTGGGATCTTTATAAGAATGTAATAACTCCTTTAAACTAGCAGAGCTTATTGTTCATTTTGTGTTTAGCAGAGGAAGTTTCTGGCAATCAGACATTGTTTGTATACACTTTTTAATATTGAGACTTTATGTTTGTATTATTTTAAGTAGCTGTTTTGGATTTTAATCCAGTTTGATTGTGTTGAATTGATTTGAATGTTTTCTGATAAGCAATAAAATCAAACTTCAAGTTGATTTGTGTTTTCATTATTGTCCTGAAATAGGGGAAAGTTGCAACCCCTTTTGTTGAAACATTGAATTCTTCGCACAAAATGTAAATGTTTTTTATAACTAACAAAATGTGTTATAATATGAGACATTAGAGATACAAAACATAAAGAAGCAATGGTCAAATTATATGTTTCGATCACCGTCAAAATTTGAAATGTTGTAATTGAGTCACGACAAGGTCATCTGACATGTTCAGCATCTCATTACGAGAGACAGTGTTCAGGTTAAGAGGTTGTATTATGCATTTGATCAAAAAATATAGTTTAAAACATTTAGTTGTTACTAATTATGTGTGTGTTTTAGCTCATGTTCCTCTCAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAATGTGTTGTGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092989:ENSDART00000136440:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF153451=TMEM51=PD(0.6=5.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGGGAGTATGTGAGTGACA
R:
AGGCCATAAGAGCAAGTTATGA
Band lengths:
274-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]