DreINT0137912 @ danRer10
Intron Retention
Gene
ENSDARG00000093780 | si:ch211-212c13.6
Description
si:ch211-212c13.6 [Source:ZFIN;Acc:ZDB-GENE-131119-8]
Coordinates
chr15:21040899-21042321:-
Coord C1 exon
chr15:21042109-21042321
Coord A exon
chr15:21041049-21042108
Coord C2 exon
chr15:21040899-21041048
Length
1060 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTAATATATCGTGTCATAGGTC
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTTTTATCAAGAGCACAAATAGTCTCCCACGGATATGAGAGCATTGAGCTGAAAGGCTCTGACAGAGTAGTGAAGGGAGAAGTGACGTTTAAAGTCCCTTTTCGCTCTCGGATGGCTCCAGAAATACAGTTTTTGGCATACTGTGTGCTGCCCAGTGAGAATGTACTTGCTGCGTCCAAAACATTTCAAACTGAGAAATGTTTTGAAAACAAG
Seq A exon
GTGAGTCTATAAGAATATGGTGATTGCATTTATGTTAGAGAATATACAGTGTTTTAGTTTCATTTGTGAAAATCACCGACTGCCCATTATCAAGCTTTTCCACAAAGCACTATCTGTGTGGACATAGCTTTTATCTACACCATTTTCCACTAAGAAATAAAAAGTACAATGACATCAGTCTATTGACAACCTAGGACAGTGGTCACCAATCTCGTTCCTGGATGTCCGGTGCCCTGCAGGTGTGCTGAGGCAAGCTCCAACTTGCCTCAACACACCTGCCTGGGTGTTTCAAGTATACCTAGTAAGATCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGTTGGAGCTAAAATCTGCAGGAAAACGGCCCTCCAGGAACAAATCTGGTGATCCCTGGCCTAGAAGAACACATATGAGAACATTATATATGAGCAGTCTGTCAGGAGAAAGAATTTTTACTATCCAGTATGGATTAGTACACATTGTACAGTACCATTATGCTTGAATAATTTGTTTTATTTAAGCATATATCATTTATCACCAATGTTTAGTTTAATCACAATTAAATCCATAGTTTAATTCTTATGCTCAAAACTGTTTGTCATTATTCTATTTGGACAAGGAAATTAATTTATGCCAATTTTTTTACTGTGCATTATTTAGACCATTTTGAGGAATGTTAACAAAAACAATGGTCCCAATGTATTTCCTTTTTTATATTTTTAATTTCTATAGCTTCCAATACTCCAAAAAGAGACACATTGATAAATAATGTTATGGTAGCTGTTTTAACATTAAGTTATGATTGAATGGCCTCTCGTTACAGTTTTGAAATAGTTTGATAACAAGCAGGAAATGTTCATGGACCAATGACAAGACCACATTGAAATGGTCTATAGTAATATAATAATAACATATATATATATATATATATAATAATATATATGTATAATAGTAATAATATATATAATATATATATGTACTGATTATAAATAAAGTTGTTTCAGGATGAACCAGATATATTCCCAATAATTGATTGGTTAATATATCGTGTCATAG
Seq C2 exon
GTCTCGCTGCGGTTTTCACCAACTACTGCAGTTCCAGGTGAAGAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGTATCAGTGCTGTAGATCAGAGTGTCCTGATCCTGGAGTCAGGACAACGCCTGGATGCTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093780:ENSDART00000137386:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAATAGTCTCCCACGGA
R:
TTTGTCAGCATCCAGGCGTTG
Band lengths:
351-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]