DreINT0137925 @ danRer10
Intron Retention
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21156703-21157066:-
Coord C1 exon
chr15:21156983-21157066
Coord A exon
chr15:21156880-21156982
Coord C2 exon
chr15:21156703-21156879
Length
103 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
3' ss Seq
AACTTTTGTTTGGTTTGTAGGAG
3' ss Score
7.07
Exon sequences
Seq C1 exon
GGGACAGTCTTTTAGAGGAAATAGATCTGACTCTTCCTAAAGACATGATAGAGGGATCAGTCACATCCTCTGTTTCCGTCATTG
Seq A exon
GTAAAATATATTTACATGTAAAATCAAAATGAAATAGCAAAAATGTACATTTGGATTTCTAAAACAGATCATATTGCTAATCAAACTTTTGTTTGGTTTGTAG
Seq C2 exon
GAGACATAGTGGGTCGTTCACTGAAAAAACTTCACAGAACATTATGGAGGATTTACAGATCTGGTAACCAAAACATAGCTATTCTTTCTCCCAGTATTTACATTCTGCAGTACCTGGAGAACACAAAGCAGCTCACCTCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315:ENSDART00000142311:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAATAGATCTGACTCTTCCT
R:
CGCTCTTAAGGAAGCTGCTGG
Band lengths:
248-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]