DreINT0139627 @ danRer10
Intron Retention
Gene
ENSDARG00000074575 | si:ch211-269i23.2
Description
si:ch211-269i23.2 [Source:ZFIN;Acc:ZDB-GENE-090312-99]
Coordinates
chr1:30298332-30301445:-
Coord C1 exon
chr1:30301327-30301445
Coord A exon
chr1:30300359-30301326
Coord C2 exon
chr1:30298332-30300358
Length
968 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTGTTTCTCTTTGTTGTAGGTA
3' ss Score
11.48
Exon sequences
Seq C1 exon
ACGTTCAGGGAAAGACTTCGGAGAGGAATGACGACGAATAATCTAAAAAGTTTGTGATTTTTTTAGGAGTTTGGCATGGTTTCTCAGTTCGTCCGTAAGTCGCAATGAATGAAGTTCAG
Seq A exon
GTATGTTTAAACTCGTTTATCCGGTCGTTTTGTTTTCGAAAATGGAAAGATAAACTTTCTTAAAGATACTCCAACAAGTCAGGCTTCATTTGGACTGAATTTGTTTACAGCAGTCACTGGGGACAGATCGACTGTCAGAAAGGAGGTGTGTAAATGGTCATAGGCTACGGTGTACTATTTAAACACCTGCTACATCTTTAAAAAAAATAAAGCAGTGCCAAAATGCGACAGCAATGACCTACAGTTTGTGTTATGTGATGTTAGCACGCTGAAATAAATGTGTGTAAAAAGTTTAATGGCAAGTATTTATAGTTTTTTATTATTATTTTTTTATTTTTTATTTTTTGTAAATGTTATTAAACTAATGGGTTTTTAGTTCTCTGTTTAAACATCGTCTTGGTATTTACGAGGAAGTATACATGTTCAGAATTCTTTCTTTCAACCTTTAAACCGTTTTGTTTAGATTTTCTTAGACTTAAGACTTAACTTTCTTGTTGTGTTATCAGTATCTAGTGGGTTTATGTTAGGTTTTAGTTGTGTGTTATGTTACATTAAGTTATCTACCAAATCAAGTAACAAGTTTAGTATTATGTCTTAAACCTAATGTCCTGTAAAGTAACAATTGCTGAATTAAAAATTGCCGAAGAGGACTTCTGTTTGCCACATGTGCTGTTATCAATAAAAATTACAATGAAAAAAAAATTTTTTTTTAATTCTCTTTGAGAATCAAATTAAATGATACTACTTCCTGCATTCATAGCTGCTGGCATTTTTACAGTAAAGTAAAAATAAATACTGTGCAACTTGGTTGCATTTGCAAAGAGATATTCTGAATTATGTGTTCTGAAAAACATTATTATGCAGTGTAGTGTAAATATGAAAAATTTTGATTAAAAAAATTAAGAAGAGGGTTAAACAGTTGCAGTGAATTACAAACTGACAGATGTCTTTGTTTCTCTTTGTTGTAG
Seq C2 exon
GTAAGATCGGTTGGCACTGTGTCACTCACTCACCATTGTCTGTGTCTACAGCCTCAGCCAGTGTGAATGAGGGCATACCATGCACCTGGATACACGCTGCTTTTTTAGCCCCAGTTTTATGTATTTTACCTTTTAAATCTTCCATCATTTTTAAATATTTGATCATGATTAAAAGTGAAAACAAAAGTGACCGTGCACTGAGAAGTGCATCTCCTCACAGAAACGCATATAAATCAGACTTTCATTCCATTAAATGCACATTTGATGGAAGTGCATCCTTCAGCGCAACTTCTCCCTTCTCCAATGGAGACGGTGAGACTCGAGGCAGACCGTCGGGTAACAAAGTGAGCAAAATAAAAAATATTTTCTTGCAAATGGATGGAAAACAAAATCAAGACAGTCCCAACATCAGCAAACCCACATCACCCAGATTTCCATTGGATTCCACCCCTTACAGGTCTAGCCAGAGCAGTGTTTCTAGTCTAGATTCAGCCACTTTTGAGACACGGAAAACAGAGGATGTTTCCATTAACAAGGCGGCTCTGGCTGAGAAGTTCTCAATGACCAGAAAGCTGTTTGAGAGTGGCCTTAAAGAACAATCTCCAACTGAAAGATCTGCCTCCATTAAAGTCATCTGGCCTCAACCAATGGAGAGACCGGATATGAAAGTGTCAGTGACTGGAGAGAAAAAGGACAAAATGAATGTGATAGAGGGACAAGCAGAAGAAAGGGATGATAAGGAAAAAGAGAAAGGCGAAAGTGAGACACCACCACATAAGCTGAGCACCTCTATGAATGCCGGGCCAATTTCCAGACGTCTGGAGAGTTTTATGTTAGACAGTGATAGCGAATCGCTGTCAGCGGCTCCTTCCACAGAATCCCACAGTCCCATCAGTCATTCCCAGTCACCTTCCGCTACTAGTGACCATTCAGATCCACCTTCATCACCAGACAGCTGTAGTTCCCCTACATCCTACTTACTATGGGCTGATTCACCTTCTGAAACATGTTTCCCCAAGTTACATGGTTCAGATTTACACAATCCCCCTTTGAATGGAGTCTGTATGCAGAAAACCTTACATAATACTAGTTCCACACCTGAAGAACATGTTAATGAATCCCCAGAGGATACAGTATCATCAGAACCCACTCTTTTGTTTACAAGTGAAAAGGTCCACATCTTCTCATCAATGACAAGCACTAGTCATGCATCTGAAGCTGAGGATCCTGCTTTTCAGGAGCAGCAAGGTGAAGGGACAAGTTCTGAGAAGGTTCCTGGTTTGTCCACAGTCAGAGCTGAGCTGGTGGTAGTGAAGACCGAATCATCTGAGAGTGAGGGCAACGAGGAGGAACTTGCTGAGGATGATGTTTTTGAGGAGCCTGAAATGGAGGAACAATCACTAAATTACAATTCTGGGAGAATTTTGACCAACAGCGAGGAACACCGATTAACATTCCTTGGGAAGTTGTGCGAGGAATCTGTACACACTGGAAAAAAGGAGGACCATAGAGGGGAGGGAAATTTTCTTGAGGAGAACATAATGGAACAAGAAGATGACGATGAGGAGGAGGGAAAAAAAGACAACAAGGAAGTAGACCGAAAGACAGACCGAACTGAGGAGGAGGTTGTTCTAGAGAGTGTAATGGGAGAGGGTGAGCAGAAAGCTACTGATGTTGAAAATAAGGAACAGCAGAATGAACAGAGAGAAGAAGAGGATAAGGAAGAGGATGGCAGGGTAGAAGAAGCTGTTGAAGCTTTGGAGGAGGACGAGGATGAACGAGAGATGGAAGATGAGGACTTAGCAGGAAAAGAGAGGCAGCAGCAAGATGATCAGGGTTTGATGGGAAACCGATCTTTAATTTGTGGAATTGAGAATGCTGCCTTTGTGGATGACAAGGACAACCGGACCGATTTGGAATGTCAAGTGAAGGAGGAATCTGAGGAATTTGAAGAACTTCCAGGACTTTCTGATGAGGAAAACCTCAACCCAAAGAGAAAAATCAAGTTTTCTACAGCACCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074575:ENSDART00000132466:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCGTCCGTAAGTCGCAA
R:
TCGAGTCTCACCGTCTCCATT
Band lengths:
358-1326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]