DreINT0140634 @ danRer10
Intron Retention
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35283726-35286039:+
Coord C1 exon
chr20:35283726-35283807
Coord A exon
chr20:35283808-35285819
Coord C2 exon
chr20:35285820-35286039
Length
2012 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTATATGCATTGTTCTTTAGGTA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GGATGAAGAGTTTTCCGCCAGTTCGGTTCTGGAGTCTGATGTCATCCATGCTAATAGGAAGGATATACCCTGTATTTTTAGG
Seq A exon
GTAAGAGCATGAAGACGATTCTCATTTGTTGCTCTTTGTGAAATGTTGTTCTGAACATTTTTTTAACACATAATATTCAGATCAATTACCATGATCAATATTTTAATTAACCATAATGTTAATTTCAACTTAATATAAAAAGTAAATACATAGTAGAGAGAATCAAAAACCTAATTTAAAAATGTTTTTGAAAATGATGCATTTATTTAACCATAATTAAAAAAAAAAAAGTTATCTTAGTAATAATAATAATTTCACAATATTACAGTTTAAAATAATTATATTTTATTATATTTTTGAAAACAGTTGTGCTAAGAAATAACACACAACTGGATTAGCATTTGAAAAGTAAAAATCTGTAATATCATATTTAGATTTGAGTAAATACAAAAGTTTTATTATTATGGTAGTTTAATACCATATTCTCATAATATGTTTGAGTCCACAATGTTATTTACTCATTTTTCTACACATTCACATGTTTAATTGTTTTGTATATCCAATGCAATACCATACATATGTAAGCAATGATGGACATTTATACTCAACTTGCAAATATAAATAAAAAAGAAATAAATATAATAAATAAAAAAGTTTTTTTAACATAGAAATATAATTTCTTATTTTTGTTTCTTTTTTCATTCAATTTATTACAGGTTTTGAAAACTGACATGAGAAAAATGCTTAAAAATTATTCATTTTAGAAATTATTGTAGCGTTATACATTGTTATTGTTTAAAAACTGCAACATTTTAAATTTAGTGTTACGTCCCAACCAGGCTAGGGTTTGCAGGAACAATAATAAAAGTATAAATTAAACTTTCAAATAATAAATTTAGAGTTTTCCCCTGTAAAGTAAATGGTGATTCCCAACACAGCTTCAATTATCCAAAAGTAATATATAGTTTTAAAATAAGTGAAAACAGGCTCAAATTAAATACGGCGAGCAGTTAGAAAAGAAATAAAGATTGTTCAGCTAATGAAATGAGTCAATCGCACCACACTAATGCAACAAATAATCTGTGGCAGGAGATAGAAGACGCTCGGAACTACAGCAACAGCGGCGGCAAGTGACCTGGACTGAGCAGGAGATCCTAAATTTATTATTTAAAAGTTTGATTAATACTTTTGTTATTGTTCCCACCAACCCTAAACTGGTCGGGACATAACAATTGGGGGCTCGTCCGCTCGGTTCTTCGATATAGTTTTTTTCTTAAAAAATTTGCTTAGTTGTCTTTGAACTTTTGGTAGGGCAGGAGTTTAAGTTTAAAATGGATTTTGATCTAATTAAGTTTTCTCTCTTGTCCACGCTAGAGGAATATGATCGGTGTAAAAAATATTTAATTATAATAGCGGAATCTAACAATTTAACAGTACCCATAGAATTAAAAAAGGAGGAAGATTTAAATCCGCTTTTATACGCTCCCGCTCGCAACACAGCTGGATCCAATCAAGTGCAGCTATAGAGAGGGAGAGAGAGGGAGACCTGCGCATGCTCCAAGGCACGCAACACAACATCAGCTATTCCATCCAGATGTGTAAACAAAATACAAATCTATATTTATGTATTATATTTGTAAATATAAAATAAATAAAGAATTATATTACCTTCTGGAACGTAACATTAACTCACTTATAACTGTGTCTGTCAAAATATTGGGATAATTCTAATTTAAATTCATTGAAATAGTCATTTAAAATTTCATTATTTATCATGCAGTATCATCATATCTTTTTCTTGCAATAATTGTGGCTTCTTCAAGAATATTAGATCAAATAATAGCGATCAGGTAATGATGTATTGACCACAGGCCGACTAACTAAATTCTTTAGCAGTCATTATTTATTTAGAATATTAATGTAACACAATATAGAGATGTTTTTGTAAATTTAATAAGTATATTATGAATATGTGAGTATGTTATTAACTAGTCATGAGCGGTCATTAGTCCTTTTATTTTAAGATGTTTTTAAATATGCTGTTAAGATAAGTTATATGCATTGTTCTTTAG
Seq C2 exon
GTAACAGCATCTCAGCTGTCCGCCTCCTCCAGTCAGAAGACGTGTATTCTAATTCTGGCTGACAACGAGCAAGAAAGGACGAAGTGGGTGTGCGCTCTGAATGAACTGCATCGCATCCTGAGGAAAAACAAGCTGAAGGAGCGTTTCGTCTATGTGCCTAAAGAAGCCTACGACAGCACACTTCCTCTCATCAAAACCACCCAAACTGCTGCTATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464:ENSDART00000040456:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.5=100)
A:
NA
C2:
PF0016924=PH=PD(30.8=50.0),PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]