DreINT0144188 @ danRer10
Intron Retention
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11059527-11060085:-
Coord C1 exon
chr4:11060011-11060085
Coord A exon
chr4:11059842-11060010
Coord C2 exon
chr4:11059527-11059841
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GATGTTGATGTGTGTTTCAGCTC
3' ss Score
7.98
Exon sequences
Seq C1 exon
AAGAGCAGGCTCGAGATTCTTGGAGTAATTTGACATGTTCTACGTCACCATCTCTTTACCATAGACAGTGTTCAA
Seq A exon
GTAAGTTTTATTAAACAAAGTTAATTCTTGATGTAAATTTGTATTTTCCTAATTAGCCATTTACTTTATTTAGCTCTGACATTATTATGAATTGGCATTCAGCTTCAACTTTACTGTGTTTTTTTGTAAATGTGTTAAAGCAGTTCAGTGATGTTGATGTGTGTTTCAG
Seq C2 exon
CTCATGTTCCTCTCAGACTGCGTGGAGGGGGCGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGTGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGTCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGATTGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCCCACAAAAAGCACGCTGGACTCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083:ENSDART00000150760:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5),PF151021=TMEM154=PU(13.3=14.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTCGAGATTCTTGGAG
R:
AATTCCCATCAGCCCTCAGTG
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]