DreINT0144197 @ danRer10
Intron Retention
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11061628-11062343:-
Coord C1 exon
chr4:11062044-11062343
Coord A exon
chr4:11061943-11062043
Coord C2 exon
chr4:11061628-11061942
Length
101 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTG
5' ss Score
3.14
3' ss Seq
ACCCTAAATTTTCTGTCCAGGTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GGTCCAGGCTAGTTGGAGCTTCTCGCTGTTCTGGGCAGTTAGAGATACTACGAGAGAACACATGGCACACAATGTGTGACACTGCCTTTGACCAGCAGGATGCAGAGGTTCTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTAACAAAGGAGACGCTCGGATGTGGACACAAGAGATTCGCTGCAGAGGAAATGAGCCTCATATATCCGTCTGTCCAATATCTTCATTCATAGTCAACTGTACCCATAAAAATGGCATAAGAATGTCATGTTCTG
Seq A exon
GTATTGAAGACTCAAAGTTTAACTTACTTTATTAATGCAATCTTTAATTTGCTTGTGATCTCATTGACACTTCTTCACTCAACCCTAAATTTTCTGTCCAG
Seq C2 exon
GTTACACTGATGTCCGGCTGGTCAATGGTCCTGACTCCTGTTCTGGTCGAGTTGAACGTCAGTACTACAGTAAATGGGGCACAGTGTGTGATGCATGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTTAATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGACGAGATGTTGGAGTCATCTGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083:ENSDART00000150760:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.0)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACACTGCCTTTGACCA
R:
CCAGCCGGACATCAGTGTAAC
Band lengths:
248-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]