GgaINT1001361 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:651174-652547:-
Coord C1 exon
chrLGE64:652233-652547
Coord A exon
chrLGE64:651489-652232
Coord C2 exon
chrLGE64:651174-651488
Length
744 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CATGTGTTTCTTACCTCCAGGAC
3' ss Score
12.23
Exon sequences
Seq C1 exon
ACCCCACCGAGGTCCGGCTGGTGAATGGCTCAAATCACTGCTCTGGGAGAGTTGAAGTGCTGCATAATCAGCGATGGGGAACTGTGTGTGATGATGGCTGGGACTTAAACGATGCAGAAGTTGTGTGCCAGCAACTGGGCTGTGGTACAGCCATATGGGCTCCATCTGCAGCTCGGTTTGGGCAGGGATATGAGCCCATCTGGCTGGATGATGTGAACTGCACAGGATCAGAGGCTGCCCTCTCTGAGTGTAGGGCCAGACCATGGGGAGTGAGTAATTGCAACCACAAAGAAGATGCTGGTGTGGAGTGTATAG
Seq A exon
GTAAGAGACTCTCATTCCTTTGTGGTGCGGCTCTGGAAGGAGTGATGCTGGAAGGACCGATGGACTCTATACTTTGCTGTGTTCCTTAAGGGAAGCATACTGCTAGAATAATGGAGAGACAACTTTATTTTGCTCATGTTAAATCTCTTGCCTCTATTTAGGTACCAATTTCAGGTTGTCTGCTAACTGTGAAGACTTTTTCCTAGGATAATGAGTGTCAGTTTCTAACCATCACTTTGCTATTCTCCATATCCCACTGACTGGTCTGTTGGGCACTGAACATCCTTTCCCTTTCCATTATGTGTGATGCTGTAGTGACACATGTTTACACTGTACCATAAAGTCCCTTTGCATGTTGAACCTCCCCTCTACCATGAGTCCATCTAGTCTACTTGGACTGCCAGGGCATCCTCTCACTTTGTGTTTCCATAGCACAAAATTTGTGTGTCTACACTCAGGTTCCTCCATGTAAGCCAGGTGGCTGAATCAAGTCTTGGGTGACCTAGTCAATGCAGCTAATTAATTATTTATGCCCAACACAGATCAGCCCACTGTAAAGTAGTCATGGATATTTGTCCACATGAACCATACTTTTTTTGGATGCCTGAGGACACCTTAAATGGGATTAAATGGCTGTGTTTATTCTAGTGGTAGTCTCCATATCACATTGCATCTGACTGCAGTTTTAGGTTCCCATCTTCTACATTTATGTGTTTGACCTGCACATGTGTTTCTTACCTCCAG
Seq C2 exon
GACCAACCCAGCTCCGCCTGGTGAATGGCTCTAACCGCTGCTCTGGAAGGGTCGAGGTCCTTCACAACCAGCAATGGGGAACGGTGTGTGACAACGGCTGGGACCTGAATGATGCAAAGGTGGTGTGCCAGCAGCTGGGCTGTGGGGCAGCTGTGTCAGCTCTGGGCTCAGCCCACTTTGGGCAAGGATCCAACCCTATTTGGCTGGAGGATGTTGAGTGCACAGGGATGGAAGGTGCCCTCTCTGAATGCAGATCCAGGAAAGGGGAGATGAGTAAATGCAGTCATGGTGAAGATGCTGGTGTTGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGAGAGTTGAAGTGC
R:
TTGTGAAGGACCTCGACCCTT
Band lengths:
343-1087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]