DreINT0148511 @ danRer10
Intron Retention
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:90114-90787:-
Coord C1 exon
chr15:90646-90787
Coord A exon
chr15:90302-90645
Coord C2 exon
chr15:90114-90301
Length
344 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TATAGTTTTCTCTGATCCAGAGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GAGAAACATAATCCTGATACAGAATTCCACAAGGAAAACATGTTTGCCACCTCTTTAAATCTGTTTACAGCTGGTACAGAGACCACCAGCACAACTTTAAGATACGCTCTAATGCTCCTGATCAAGCACCCTCACATTCAGG
Seq A exon
GTAGGTCCAAAACATTTGTTGGGTGTATGATTGATGTTGTGTTAAGCTCATCTAGCTCTACTCACACACGTCAGTTCTGTGGTGACTGTATTTCACTGCTCTTTATTGTTTGTACAGGGTGCACACATGAAGACTCCAACATATTTTAAACATGTTATTTTAAACAAGTCTGAAACATTTCGTAGCTTCTTTGTTTTAAACTTATGTTCTGGAAAGAACTGAAAAAAGTAACACATTTAAACATAACTTTGTAAGTGTCTTGTGTGCTTCTCTGCCATACTGCACTTACGTCTGGATTTTTCCACAATTACTAAATAAAATTAATATAGTTTTCTCTGATCCAG
Seq C2 exon
AGCAAATGCAGAAGGAAATAGATTGCGTTATTGGACAGAACAGAATTCCAACAATGGAGGACAGAAAGTCTCTTCCCTTCACTGATGCTGTGATTCATGAAGTGCAGCGCTGTCTGGACATTGCACCACTGAACGTTCCCCATTATGCCCTGAAAGACATCACTTTCAGAGGCTATAAAATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493:ENSDART00000099074:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATAATCCTGATACAGAATTCCAC
R:
CTTGGGGATTTTATAGCCTCTGA
Band lengths:
326-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]