HsaINT0044209 @ hg19
Intron Retention
Gene
ENSG00000197838 | CYP2A13
Description
cytochrome P450, family 2, subfamily A, polypeptide 13 [Source:HGNC Symbol;Acc:2608]
Coordinates
chr19:41599535-41600337:+
Coord C1 exon
chr19:41599535-41599676
Coord A exon
chr19:41599677-41600149
Coord C2 exon
chr19:41600150-41600337
Length
473 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
ACATTCCCCTCCTCCCCCAGCCA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GAGGAGAAGAACCCCAACACAGAGTTCTACTTGAAGAACCTGGTGATGACCACCCTGAACCTCTTCTTTGCGGGCACTGAGACCGTGAGCACCACCCTGCGCTACGGTTTCCTGCTGCTCATGAAGCACCCAGAGGTGGAGG
Seq A exon
GTAAGACTGGAAAGGGAGGAAAGTGAAGGGCCCCAGACCCTCAAAACTCCCCTGAGCCTGGTGCAGTGTACCCACCTATCCCAGATCCCAGGACCCTGAGACGTGCCTTGCTGTCCAGAGACAGGACAATATTCAGCTGATAGGCATCAGCTGAGTCTCATTAGCTATTAAAATATTGAAAATGTCTGCACTGATTGGTCAGTCACTCCTGTCCCAAGCCCACTGAGTGTCCGCTGCCTGCTCCTCTGGATCATCCCCTAAGTTCCTCCCTGTGCCTACCCTGTGATTCTGACACAACCTGGTTTAACAGGATCCTGCTGCAACAATGCGAATGGCTGATGTCTGTTCTGTTATGAATGGTCTACCTCCGTGTCATAGGTGGAGCTATGTCAACCACCGTGTTTTACCTATTCGGACTATCATCCCTGCTCTAAGACCCCTAGACACCTAAACACATTCCCCTCCTCCCCCAG
Seq C2 exon
CCAAGGTCCATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGGCCAAGATGCCCTACACAGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACATGCTCCCCATGGGTTTGGCCCACAGGGTCAACAAGGACACCAAGTTTCGGGATTTCTTCCTCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197838-CYP2A13:NM_000766:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGAACCCCAACACAGA
R:
AGAAATCCCGAAACTTGGTGTCC
Band lengths:
318-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)