MmuINT0044755 @ mm9
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27819045-27819817:+
Coord C1 exon
chr7:27819045-27819183
Coord A exon
chr7:27819184-27819629
Coord C2 exon
chr7:27819630-27819817
Length
446 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CATCACCCCTTGTCTTCCAGCCA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GAGAAATATGTTAATTCAGAGTTTCACATGAAGAACCTAGTGATGACATCATTGAACCTCTTCTTTGCTGGGTCTGAGACAGTCAGCTCCACACTACGATATGGCTTCCTGCTACTAATGAAGCATCCAGATGTAGAGG
Seq A exon
GTGAGGCTGGCTGTGTGGCAGGGAAGAAATTGGGAACCCCAGATGCTCCAACTTTTTCCAACTTGACAATGACCCTCACCTTTCCCAGGTCCCTGGATGCTCAGACATGCCCTGCTATGCAGAGACAAGAGCATATTAAATGCATAAACAGAGTTCTCAATAACTGTTAAAATATTAGACATCCCCAAATTGATTTCCCACTGGCTGCCAGATCCCTGCTCTCTGGTCCCTGGCCTGACTCCTCCTTCTTCTCCCCACCATGATTCTGTCATGAAAAGGATAAAATGACCCTGCCCAACATTTGGTATGAAAACATGTTCTCAATGGCCTATATGCATGTCACTTACAGAGACATGTACTACATACAGTGTTACACATGTGAACTATTGCACCTGCTTTGAGGCTCCTGGACTTTTAAAAACACTCCATCACCCCTTGTCTTCCAG
Seq C2 exon
CCAAGGTCCATGAGGAGATTGACCGAGTGATTGGCAGGAACCGACAGCCCCAATATGAGGACCATATGAAGATGCCCTACACCCAGGCTGTGATCAATGAGATCCAGAGATTTTCTAACTTTGCTCCCTTGGGCATTCCTCGAAGGATTACCAAGGATACTTCCTTCCGTGGCTTCTTCCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-Cyp2a12:NM_133657:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAATTCAGAGTTTCACATGAAGA
R:
CTTGGGGAGGAAGAAGCCAC
Band lengths:
319-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: