BtaINT0010146 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50418488-50419509:-
Coord C1 exon
chr18:50419368-50419509
Coord A exon
chr18:50418676-50419367
Coord C2 exon
chr18:50418488-50418675
Length
692 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CGTTCTCCCCCCTCCCCTAGCCA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GAGAAGGAGAATCCCAACACGGAGTTCTACAGGAAGAACCTGGTGATGACAACACTGAACCTCTTCTTTGCGGGCACCGAGACGGTCAGCACGACCATGCGGTATGGCTTCCTGCTGCTCATGAAGCACCCAGATGTGGAGG
Seq A exon
GTAAGGCTGGAGAGGGTGGGGAAGCGGGCACCACGGACCCCTCCCCCAAATTCCTCTGAGCCTGCTGCAATGGTCCCATCTCTCACAGGTCCATGGACCCTCAGACACGCTCTGCTCTCTAAAGACTAGGTGATGTTTGGCTGATAAGCACCAGCCAAGTCTCACCAGCTGTTAAAATATTGAAAATATCTGCACTGATTGGTATATAGTTCCTGCGGCTGACCCAACCAAGTGCCCACCGCCCCCTCCTCCAGATATTCCCCAGGACTCTTCCTTTGCACCTCCCCTGTGATTTCCATAGGACCAGGTGAACAAGGTGGGCTTCCCTGGTGGCTCAGTGGTAAAGAACCTGCCTGCCAGTGCAGGAGATGCAGGTTCAATCTCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTTCTGCCTGGGAAATCCCGTGGACAGAGGAGCCCGGCAGGCTACAGTCCATGGGGTCACAAACAGTCAGACACGACTGAAGCAACTAAACAACAAGAAAGAGAACAAGACCCTGCACCAACAGTGTCTACAGCCGACGTCGGATCTGAGTGGTCTGCATCCACATCACACATGGATGTCATGCATGTTGTACATATTTGGATTTTCATTCCTGCCCCGAGTCCCCTCAAGAGCTAAATACGTTCTCCCCCCTCCCCTAG
Seq C2 exon
CCAAAATCCATGAGGAGATTGACCGCGTGATCGGCAAGAACCGTCAGCCCAAGTTTGAGGACCGAGCCAAGATGCCCTACACAGAGGCTGTGATCCACGAGATCCAGAGATTCGGAGACATGATCCCCATGGGCTTGGCTCGCAGAGTCACCAAGGATACCAAGTTTCGAGACTTCCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAATCCCAACACGGAGT
R:
CTTGGGGAGCAGGAAGTCTCG
Band lengths:
326-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development