MmuINT0044779 @ mm9
Intron Retention
Gene
ENSMUSG00000005547 | Cyp2a5
Description
cytochrome P450, family 2, subfamily a, polypeptide 5 [Source:MGI Symbol;Acc:MGI:88597]
Coordinates
chr7:27625379-27626143:+
Coord C1 exon
chr7:27625379-27625520
Coord A exon
chr7:27625521-27625955
Coord C2 exon
chr7:27625956-27626143
Length
435 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCCATCCCTGTTCTTCTCAGCCA
3' ss Score
6.7
Exon sequences
Seq C1 exon
GAGAAGAAGAACCCCAATACTGAGTTCTACATGAAGAACTTGGTGCTGACTACACTAAATCTCTTCTTTGCTGGCACAGAGACCGTCAGCACCACCCTGCGCTATGGCTTTCTGTTGCTCATGAAGCACCCAGATATTGAGG
Seq A exon
GTAAGGAAGGCTTCAAGGAACAGGAAAGCAGGAGTTAAGGGGAGTGTGACGTGGATATAGATTCTAAACTTGCATCTTGCATCTAAACTGTCTGCCACAATATCCCCTACATCTCTCAAAAAATTGGATTCTCAGATAACTAGTTACTCCCTGCTTTACCTAGACAGAGCCACTGGTGGGTACCAGTGGGCTGGTGTGTTGCTCATCTGCACTTCAAAGGAGCTACTTCCTGCTCCCCAGGTCACCAGCTAAACATCCTTTCCATATAATTCTGGTGCAATTCACACAGATCCCAAGAAGCAGTTTCACCAATGCATGATTTGCATGTTGTGAAAATGATCTACAATGCCATACAATGTTCCCTGGCCTCCATCCTGTCTTAGTTTCTCCACTATGAAGTTCTTGGATACCTAAACCCATCCCTGTTCTTCTCAG
Seq C2 exon
CCAAGGTCCATGAGGAGATTGATCGGGTGATTGGCAGGAACCGGCAGCCCAAGTATGAGGACCGAATGAAGATGCCCTATACGGAGGCTGTAATCCATGAGATCCAGAGATTTGCAGACATGATCCCCATGGGCCTGGCTCGAAGGGTCACCAAGGACACCAAGTTTCGAGATTTCCTCCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005547-Cyp2a5:NM_007812:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGAACCCCAATACTGAGT
R:
TGGGGAGGAGGAAATCTCGAA
Band lengths:
327-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: