DreINT0054323 @ danRer10
Intron Retention
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:99897-101347:-
Coord C1 exon
chr15:101206-101347
Coord A exon
chr15:100085-101205
Coord C2 exon
chr15:99897-100084
Length
1121 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTCAAATGTTTTTGTTTAAGAGC
3' ss Score
5.98
Exon sequences
Seq C1 exon
GAAAAAGACAAGCTTGACACAGAATTTCACAAAGATAACTTGATGGCGACAGTTTTAAACCTGTTCGTAGCTGGTACAGAGACCACCAGCACAACTCTGAGATATGCCCTGATGCTGTTGATCAAACACCCCCAAATACAGG
Seq A exon
GTAAGACCTTTTAAAGGCATATTTACACCAAGCAAAGTAACACAACAACTTATTGCATACTATCTCATTTTGCATTCAGATTTTAGGTGCAAAGGCTGAGGCTAGGGGTTTAGTAACCGCTAGCACGTTTGTACATTTGTACAATGAATGTGACCTCTTTAGTTTTAGCCATGACTCCCTGAGAAGAAACAAAACTCAGAATCTGTGACACTTTTAAAAGCAACTGCAAGATTTTAAGTCAGTCACCCTAACCCACAATAAGGCTAACCATAACAATGTTGCACAAAACTTTACAACTGCTGTAGAAGAATAGCAGTACAGTGAGCTGCTATGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTTGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTCAGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCATGGGTTTCCTCCGGGCGCTCCAGTTTCCCCCACAGTCCAAACACATGTGGTACAGGTAAATTGGGTAGGCTAAATTGTCCATAGTGTATGAGTGTGTGTTTGAATAAGTGTGTGTGGATGTTTTCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGTGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAATTGAACTAACAGTGAACAAACCTCTAGCAGAGCGATGACACAAAACAGATGAAGTATCTTGACAAGAATGTCTGTAAATACTCAATTTAAATGTACAGTTGTGTTCTTATGAAAGTTACTCTTGCATTAGTTGAGGATAAATTGCAACCTAGCATCCCGTTATGTCACATATTTGTTCATGATTGGTGCTACTGACCCTTATTCACAGCTTATTGGAGGTCTATCAAACTGACATTTATACTAACCAAGCGCAGTCCACAGACCACTCCTCTATCCTGTGAGCTAAAGGTCTCATTATGCAATAAAATCTCAAAAAATATTCTTGAAAATATGCTCAAATGTATTAGTTTGTGTAGATAGAGCCAACAATGCAATCTAATGCAATATGTAGGGTCTTTGCTTTCTTTACAATTATTCTATTTTTTCAAATGTTTTTGTTTAAG
Seq C2 exon
AGCAAATGCAGAGGGAGATAGATCGCGTTATTGGACAGAACAGAATTCCTACAATGGAGGACAGAAAGTCTCTCCCCTTCACTGATGCTGTGATTCATGAAGTGCAGCGCTATATGGACATTGTGCCTCTAAGTCTTCCCCACTATGCCATGAAAGACATCACTTTCAGAGGCTATAAAATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423:ENSDART00000164323:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGACAAGCTTGACACAGA
R:
TGGGGATTTTATAGCCTCTGAAAGTG
Band lengths:
328-1449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]