GgaINT0016197 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2262671-2263325:-
Coord C1 exon
chr14:2263184-2263325
Coord A exon
chr14:2262856-2263183
Coord C2 exon
chr14:2262671-2262855
Length
328 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGCCTTCCCTTTGACTACAGAAA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GAGGATAATAAAAGCAATACCCTCTTTCATGATGCAAATGTGTTGGCCTCTGCACTTGACTTGCTCATGGCTGGCACTGAAACAACGTCCACCACCCTGCAGTGGGCCGTCCTGCTGATGATGAAGTACCCCGAGATTCAAA
Seq A exon
GTAAGACACCTTTGTGGGCTCACTTCTCTTACACAGGGAATTAAAGCTCTCTGCAGTGGCTTCATAAATGCTGCTCACCTACAAAAGCCCCATGTCTTCTCTCTAGGGCATCCAGAATCTGAGTGCCTGCAGTGTGTCTGTCTCTATAAAAGCTTTGTATGCTGCCCTTCAGGACTGAGGGATCGGGGCTTGCTCTCACACCTACTGCCAGGGGCTGCATATCTTCACTGCATCCCGGGGTGGTTCAGCCAGCAGTCACCATGGGTCAGGGTTTGGAGATGCTTTACTGTGGAGGGAAACTCACTCAATGCCTTCCCTTTGACTACAG
Seq C2 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATAATAAAAGCAATACCCTCTT
R:
TGAAATAGCCTTTAAAACGAGTGTCA
Band lengths:
319-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]