RnoINT0044440 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17383765-17384167:-
Coord C1 exon
chr12:17384029-17384167
Coord A exon
chr12:17383950-17384028
Coord C2 exon
chr12:17383765-17383949
Length
79 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
AGTGCCACCTTCTGGCCTAGGTC
3' ss Score
6.99
Exon sequences
Seq C1 exon
CAGGATGACCCGGAGGACATGTTTAGCGAGGCTAATGTTCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACTACGGCAGCCACACTGCAGTGGGCAGTCTTCCTGATGGTTAAGCACCCACACGTGCAGG
Seq A exon
GTGAGAGTCACCCCATGGTAGAGAACCCTTAGGGGTTAGGAATGGGGCTTCACCCATACAGTGCCACCTTCTGGCCTAG
Seq C2 exon
GTCGTGTGCAGGAGGAGCTGGACCGAGTGCTGGGCCCTGGGCAGCTACCTCAACCAGAGGACCAGCGAGCACTGCCCTATACCAGTGCTGTGCTGCACGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACGGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGGTCATGGCTGGAAC
R:
GCAGCACAGCACTGGTATAGG
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]