GgaINT0015027 @ galGal3
Intron Retention
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2263742-2264154:+
Coord C1 exon
chr14:2263742-2263837
Coord A exon
chr14:2263838-2263969
Coord C2 exon
chr14:2263970-2264154
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
3' ss Seq
CCATTCTTTGTTCCTTCCAGAAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
CATCCATACTTGACCTGGTCATGCCGTGCACAGAGACCACGGCCACCACGCTGCAGTGGGCCATCCTGCTGATGATGAAATACCCAGAGATCCAAA
Seq A exon
GTGAGCTTCTGGTGTTTTAAGACTCCTCTTCCTCCAGACCCCGGGAAAACACATTTTTTTTTACTAAAATCAAATCTGGAGGGGGAGTTGGTTTCCTTGCTGGGATACATCCCCATTCTTTGTTCCTTCCAG
Seq C2 exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.4=100)
A:
NA
C2:
PF0006717=p450=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCCGTGCACAGAGAC
R:
TATCCCCTGAAGTGGGTGTCC
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]