GgaINT0015027 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2257044-2257499:+
Coord C1 exon
chr14:2257044-2257182
Coord A exon
chr14:2257183-2257314
Coord C2 exon
chr14:2257315-2257499
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
3' ss Seq
CCATTCTTTGTTCCTTCCAGAAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
AAAAACAAGAAAGACAGCCTCTTCCATGATGACAACTTAATAGCATCCATACTTGACCTGGTCATGGCGGGCACAGAGACCACGGCCACCACGCTGCAGTGGGCCATCCTGCTGATGATGAAATACCCAGAGATCCAAA
Seq A exon
GTGAGCTTCTGGTGTTTTAAGACTCCTCTTCCTCCAGACCCCGGGAAAACACATTTTTTTTTACTAAAATCAAATCTGGAGGGGGAGTTGGTTTCCTTGCTGGGATACATCCCCATTCTTTGTTCCTTCCAG
Seq C2 exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCTCTTCCATGATGACA
R:
ATGAACCTCTGCACTTCGTGG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]