BtaINT0046226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306963-42307409:-
Coord C1 exon
chr25:42307271-42307409
Coord A exon
chr25:42307148-42307270
Coord C2 exon
chr25:42306963-42307147
Length
123 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
3' ss Seq
GCCGTCTGTCTCGCCCGCAGGCC
3' ss Score
12.55
Exon sequences
Seq C1 exon
GAGAAAGACCCCGAGGGCCTGTTTACCGAGGCCAACGTGGTGGCCTGTGTCCTGGACATGGTCATGGCCGGCACGGAGACCACCGCCGCCACACTGCAGTGGGCCGCCCTCCTGATGGGCAAGCACCCGCGCGTGCAGA
Seq A exon
GTGAGCCGGGGGCGCGTCTCCGCGGGGCCCTGGGCGCAGGGGGGCGGGGCCGGGGTCGCAGCGGGGCGGGGCCCGGGGCGCAGGGCGGGGCCCCGGCATGCTGGCCGTCTGTCTCGCCCGCAG
Seq C2 exon
GCCGTGTGCAGGAGGAGCTGGACCGCGTGCTGGGGCCCGCGCGGCTCCCGCGGCCAGAGGACGTGCACGCCCTGCCCTATACTAACGCCGTGCTGCACGAAGTGCAGCGCTTCATCACGCTGCTGCCCCACGCGCCGCGGTGCACGGTCGCCAACACCCAGCTGGGCCCCTACCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTTACCGAGGCCAAC
R:
CGTGATGAAGCGCTGCACTTC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]