RnoINT0044383 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83634474-83636129:+
Coord C1 exon
chr1:83634474-83634615
Coord A exon
chr1:83634616-83635941
Coord C2 exon
chr1:83635942-83636129
Length
1326 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TATTTTCTGCCATTTTACAGCCA
3' ss Score
8.16
Exon sequences
Seq C1 exon
GATAAAAGTGACCCACACTCAGAATTCAACCTCAAGAACTTGGTTCTCACCACCCTCAACCTCTTCTTTGCTGGCACGGAAACTGTGAGTTCCACACTACGATATGGATTCTTGTTGCTAATGAAGTACCCCGAGGTGGAGG
Seq A exon
GTAAGTTTCACTCTGAGCTTCCTTGGAGGGGTGGCAATATTGAAATGGTACAATCCCACATCCTTAGCCTCTCTTCCCTCAATAACCTCAGAGCATGGGACTTTTACCTCTCTGATTGGTCCTTGCACTTATTCTTCATGGCTGTTAAGAGTTAGTAGTCTCTATTTGTCATTTGACCTTTCTTGTCAGGACTTCTCAGAGTGGCTTCCACTAGACTGATACCAAGGTGTTCTCTCTCACTCTCTCTTTGCTTCTGTTACCATGGCTCCTCTTCTAACTCCCACCAACCCTCTTCTCTATGATTGAGATACACAACTACCCAATATGGATGATCCATCCAGCTAATCTCCTCATTTCCCAGAAACCTGGAGAGAACAGCAAATTGCCCTTTGACCTTGTGTTTTCCTTATGTATATAACATTGATGTCATGGATTTGAGGGTGGATCTTTTCCCTTCCCATTTCTCTTTGAAGTGGGATCTCTGCATAGTCCATGCCGACCTCGGTCCCAGGAGTCTGGGATTACAAGTGTGTCTTCTCACCCAGGTGAGACTATTTGAGGACTATTGCTCAGCTGACTACATTGTCCATATCAAACAGACTTCATGTCTGATAAGCTATAATTTGATCTGCTTAGGGAACTACAGTAATCAAAAGTCATTTCTTGCTTAAGAAAGCTCTCTATTTGGACTTTATAACAGTCAAGTTCAAAACAAGTCTTTGGTGAATAAAAGCAACATCTGCATGTACAGTTCAACTGAAACCAGGATGTTGTTATGATCATTACTCACCCCCATGGTATTTTTAAGTAAGGATCAAATTCCCAAATGGCATTCAAGATTCTAGGCTCTATGGCTCCTACTGTCTAATGAACGTTCAAGTACCAGTGATGGCTGTCATTAAGTGTAATGAAGCAATCCAGACACATATTCTCCTGTAAGGCTCACTGTTTTTCCCAGCTCTAAAAATAGAATCTCCATCCCAAGATCCTTAATGTAATGACATCTGCAAAATGCAGGGACATGGCTTGCCCTAACCTATTAACACATACATTTCCTAACCTATTAACACATACACTCCCTGGCCAGACATGTGCCTCATACCTGGAATCTGGCACATATGAGGCAGAGTAGAGAGGCACAGCATTTGAAACCTGCACAATCTAGATAGTGAATCCTAGTCCAATATGGACTACCTAGTGAAACCCTGTTGACAAAGAAATAAGCACATGTTCCCCCTAACCACAAGTAAAAACAAAGACCAAACAAGGACTGCAAACATCTGATTTTCTGTCCCCTTTTCTGGTATATTTTCTGCCATTTTACAG
Seq C2 exon
CCAAGATCCATGAGGAGATTAACCAGGTGATTGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGATGCTGTCATCCATGAGATACAGAGATTGACAGATATTGTGCCTCTGGGTGTTCCCCATAATGTCATACGGGACACTCATTTCCGAGGCTACTTCCTACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCACACTCAGAATTCAACC
R:
GGGTAGGAAGTAGCCTCGGAA
Band lengths:
319-1645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]