HsaINT0044225 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:41383095-41383898:-
Coord C1 exon
chr19:41383757-41383898
Coord A exon
chr19:41383283-41383756
Coord C2 exon
chr19:41383095-41383282
Length
474 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CATTCCCCCTCCTCCCCCAGCCA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAGGAGAAGAACCCCAACACGGAGTTCTACTTGAAGAACCTGATGATGAGCACGTTGAACCTCTTCATTGCAGGCACCGAGACGGTCAGCACCACCCTGCGCTATGGCTTCTTGCTGCTCATGAAGCACCCAGAGGTGGAGG
Seq A exon
GTAAGGCTGGAGGGGGACGGAAGTGGAGGGCCCCAGACCCTCAAAATTCCCCTTCGACTGGTGCAATGTCCCTACCTGTCCCAGATCCCAGGACCCTGAGACGTGCCTTGCTGTCCAGAGACAGGGCAACATTCAGCTGGTAGGCATCAGCTGAGTCTCATTAGCTATTAAAATATTGAAAATGTCTGCACTGATTGGTCAGTCACTTCTGTCCCAAGCCCACTGAGTGCCCGCTGCCCCTTCCCCCGGGTCATCTCCTAAGTTCCTCCCTGTGCCTCCCCTGTGATTCTGGCACAACCTGGTTAACAGGATCCTACTCCAACAATGCGAATGGCCGATGTCTGTTCTGTTATGAATGCTCTACCTCCGTCTCATAGGGGGAGCCGTATCATCCACCCCGTTTTACCTATTCAGACTATCATTTCCTGCTCTGAGACTCCCAGATACCTAAACACATTCCCCCTCCTCCCCCAG
Seq C2 exon
CCAAGGTCCATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGACCAAGATGCCCTACATGGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACGTGATCCCCATGAGTTTGGCCCGCAGGGTTAAAAAGGACACCAAGTTTCGGGATTTTTTCCTCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP2A7:NM_030589:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGAACCCCAACACG
R:
AAAATCCCGAAACTTGGTGTCCT
Band lengths:
318-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)