DreINT0151525 @ danRer10
Intron Retention
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45150987-45151793:-
Coord C1 exon
chr5:45151700-45151793
Coord A exon
chr5:45151067-45151699
Coord C2 exon
chr5:45150987-45151066
Length
633 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGACCGTGTCCTTCTTACAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
TCTGACTATCCTTACAATGAGAATGTCCCCAGCATTAAAATCCCAATGGACATGATGGAGCAGGAGCCTTTTTTAGGAGATAAGGCCTCTGACA
Seq A exon
GTGAGTAGCCAGAACCCGGGGCCTCAGCTCGACCTGCAGCTCTTTAATGATTCAGCATGAGTGTTTGCTTTCTCTTTTTTATGTATGCGGTGCACAATGACACTTTGCTCCTGTCGCACAATGCCCCTGGCGTTTGTCAACTGACAGCTTCATTACCTCTTCCTGCCTTGTCCTAATCTTTTTGTTTTACTTTTGACTTCTGGTTTACTTTTACACCTTGCTTGTGCCACTATTGTTTCTTGCTAATGTGAATTTAGGGATCATTTTAATACTTTTGAATATTCTTTATTTTTAAAGAGGATTATTACCAAGGCCGGTAAACATCAGTCCTTTTCCATTCACTAAATCTTTTTTGTTGACTTATCCTGTTTTCTTTCCTACTAAATCCTGTATCTTAATTTGTAGTTGTATTAGTCTTAATGACCTACTAATGAAAATGCTAATTTAAACAATTCCATTAAATCCCATCACACACGGGAAATAAAATCCTTGCATGTTTTATTTATTATTTAGTGGTTCTGTTTTGGTGTTCGTTGCATGCATCTGCTGGAGCTTTTCATCTAAATGGCATGTATGCATGATGGTGGTGTTCAGTTCATGTGTTGATAATAATGGACCGTGTCCTTCTTACAG
Seq C2 exon
GAGAAAAGTCCGCTTCAATCCTGGACCGATATTCATCGTGCTGAAAAGCGCCACTACTTTCAGTCCAGTCCAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730:ENSDART00000124336:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=PD(32.9=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]