DreINT0151591 @ danRer10
Intron Retention
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42806670-42807020:-
Coord C1 exon
chr16:42806859-42807020
Coord A exon
chr16:42806784-42806858
Coord C2 exon
chr16:42806670-42806783
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TCAGCTTCTGTCCTCTGCAGGTC
3' ss Score
11.33
Exon sequences
Seq C1 exon
GATTGCAGGGATCTTCATGGCGAGTTTGTGGGTCCTGCCTGTGGACATAATGGCCCGTACATCCCTGATGTGTTGTTCTGGTCGGTCATTCTCTTCTTCACCACTTTCTTCCTCTCATCCTTCCTCAAGCAGTTCAAGACCAAGCGCTATTTCCCCACTAAG
Seq A exon
GTCTGTCAAGTGCTCTGCCTGGTCATGCGCTGATAAATGTCATTTAATCTAACGTTCAGCTTCTGTCCTCTGCAG
Seq C2 exon
GTCCGCTCTTCCATCAGTGACTTTGCAGTTTTTCTAACCATCATGATCATGGTCTTGGTGGATTATTTAGTGGGTATCCCCTCTCCTAAATTGCACGTCCCAGATAGATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952:ENSDART00000112879:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCAGGGATCTTCATGGCG
R:
AGTCACTGATGGAAGAGCGGA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]