DreINT0152461 @ danRer10
Intron Retention
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24236772-24239498:-
Coord C1 exon
chr14:24239427-24239498
Coord A exon
chr14:24236844-24239426
Coord C2 exon
chr14:24236772-24236843
Length
2583 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTTTCATTCTTCTCTTTCAGAAC
3' ss Score
12.99
Exon sequences
Seq C1 exon
TATCCTGAGCTATAATCAAATACGCTGCGTCCCGGTTCATGCGTTTGATGGCTTGCGCTCTCTCCGCCTGCT
Seq A exon
GTAAGACTCCCTTTTGTTTTTTACCTGATGAACCAGCAATCCGCTGCACAGTCACATCAATCTCTTTCTCTCTCTCTCACACGCACACACACACACATAAACTCCCCATGCACCACAACACCTCTCTGAGATCCCAATAACCTGCCTTATGGACTTAACTTCAGGAGATTACTGCTCCAACAAACAGCTTTGGAACAACATGTTCACAGCATCAGCAAGTTCTAACGGAACAAAGCAATAGATTGTCCCATGGGTTAAATTTTTTATTAAAACTACAGTAAGTGATTTTGTTTTTCCTTTCGTTTTAGTGAACGTCTGGTTAAAACAGTATAAAATGTGAACATTTTCACCATGCTTTCATCTTTTATTTTTTACCCTTTTTCAGAATTTTCTGACTTCTTATGAAACTAGTGAATGTCACATTATAAAAGTGTGACACGTTAAAACAGTCGGAAAATTTTCACTATGTCTTCATCTTTTATTTTTACCCTTTATTTAAACTAAATGAACATATATAAATAATTTATATTTTTATCACATTTTTAAGTGAGTTTTTCTGACAAAACACAGAAGACACAGAAATCTTGTAATGTTGTGTGCATTTGTATATTATTATTAAATTCTAAAAGTGAAAATACTTAGTAAAACAAAGTAATATAATCTAATATTATTTCATATTTTATCTAATATTATATTATATTATATTATGTTATATTATATTATATTATATTATATTTTTTTATTTTATTTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATTTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTACATTATACTGTATTATATTATTTTATATTAATTTATATTATTTTATATTATATGGTCAATAGTATTTTATTGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATTTTATCCTCATGTTGGCTTGTCCGTAGTGTATGAGTATAAATGAAAGTGTATGGATGTTTCCCTTTCCTGGGTTGCAGCTGGAAGGGCATCCGCTGCTTAAAACAAATGCTGAATAAGTTGACGGTAGAGATCTGCCTAATTTTTCTGGACTAATTTTTTTATTCAGCCTTTGTTCACCCGCTGCCCGACCCGCCGCATTTCCTACACGACCCGACCGTTCTCACTAAATTTAGATCTGGTTTCGAAAATCTCATGTTTAAAAAGGGTACTACCGAAAAATAGAGATAGCGGATAAAACTGTTGATTATTCAAGGATCAAGTGCTAAATTTTGTTTGCCCCTTTATGATGAGACATGAGTGCCGTCTTATACCTGAGGTTCTAGTCTTGTGACTGCTAAAGGGTAAAACTTTAAGGTATTATCACATCACACAAGAATAAAGTTTTTTCATGACACATGAAAAAGACTCCCATACATCAGACTTGCTTGATGTGAGTTTCCTAACACTAAACAATTGTTTTTGTAATACAGGCTGAAGGACAGCACATCTTCACTTAGCTCTCGCATGTTGGTAAAGGCCACTCTGAGGAACGTTATGCTGATGATACACGCACAGACAAAAAAGCACATGCAGAAAGCACTGGTCATGAGTCATGAGTCATCATGTGTAACGGTTGTGAGCACTGGCTGGGGGACGTCGGGACTCGGGAGCACTACATTGTTAGACTGCCCGATCCTGTTCAAATTACACCCGAGGGACTGACTGTTACCGTGTTTCATTCGAAAATGTATTCCCGCGCTGCAAGAAATCTGGTCGGGTCAGACCTTTAGTTGGCAGCTTATACTGCTGTGGTGACTCTTGATGAATAAAGGTACTAAGCTGAAGGAAATTTAATGAATGAATATTATATATTTTAATTATTGTTAAAACTCTATGGTGAAAATGACATATTTTATGTGAGGAACAAAAATAAAAGACTGATTTCTCCTGTAACGCAGTTATAGTATATTCTCTCCTCGAAGTTATTAGAAGGCAAACAGTTGGAAAAACACTGTTAAATGTCTCCATGCATTCAGCAGGATGGTTTTCTCCTGCTGGTCTGGGCAGGATAGGTTATCAGCACCCTGTGTGCACAGATACGTTAAACAGACCAAAGGACGCCCACCTATTTCTGGCCTCTTTAAGCTTAGTCTGCCAAGCAGTCATCAGTGTCACTTTTTAATTTCCCAGAATGCCCCAGGGCCACAGTTGACGTGGCCTCAAGGGTCTGTAGCTGTCCAATCATGTTCTCAGGTTGCCTGTATATGTGTGGGCCGAACGGTCTGTAATAGAACAGGAGAAATGATTAAACAGAATAGACAATGCATATGAAATCTCAATGCAAATCTGCCGTTCCCACTGGTGTCTCGCAAAAAACAGCAGAGGTTTTCTATAATCTGCGCTAAATGCCATGAATGAATGACCCTTTCTTTCACTCTCTATCTTTCTCTCTTTCTTTCTTTCATCATTTATAGTGTGAAAAACAATGAAGCCAGCTCCCGGAGCTCAATGCTTTTTTTTTTTTTCATTTTCTTTTCATTCTTCTCTTTCAG
Seq C2 exon
AACTCTCCACGGAAATGACCTTTCAACTGTTCCGGAGGGAGCCTTCAACCACTTGACATCTCTATCTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268:ENSDART00000146299:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(40.0=100)
A:
NA
C2:
PF138551=LRR_8=FE(40.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]