HsaINT0154552 @ hg38
Intron Retention
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168712283-168722327:-
Coord C1 exon
chr5:168722256-168722327
Coord A exon
chr5:168712355-168722255
Coord C2 exon
chr5:168712283-168712354
Length
9901 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ACCTGTGCCCTCTGCTTCAGAAC
3' ss Score
9.84
Exon sequences
Seq C1 exon
GATCCTGAGCTACAACCGGCTGAGGTGCATCCCCGTCCACGCCTTCAACGGGCTGCGGTCCCTGCGAGTGCT
Seq A exon
GTGAGTACCCCAATGTGCTGATTTTGACTTACACATTGCTGAGTGACAGCAGGAAGCAGACTAAGCACTCCCCTTCCCCACTCTCTGCCCAAAGCCCACTCCACCCCCAAACACACCTTCCTACCCAGCACCCTTATTTGCTCAGTGGAGTAGAGAGAGCTACCTTTGAGAGTCTGCCATTCCCAGGGTCCAGCGCACTACCACTGTGGAACCTTGAGCAAATCACTGAGCCCCTTCAACTTTCTGCTTCTTTATGTGTAAAATGGGATCAATAGCACCTCCTTTGTGAGGATTAGGATATGCAATTGTATTCTACCCTCTAGTATTGAGCATAGTGTGTGGTCATAGCCACGTTTCGATGATCATTCTGTTGACAGTTGTTTCCTCAGAGGGGCAATGCAGCATGGTGAACCTCTGCATGGAAACAGCTCCTACCCCAGAGATCACAAGCTGGAAACCCAGGGCCCCCGTCCAGCTCACAGACAGCTATTAGTTAGCAATTGTGGGGTTGGCTCATAGAGTGTCTTTTTAAGAACACAAAGCTTAATAAGCTGTCAACATTTAAATATCAGATTTCTTCCACAAATCCCACTCTCTATATTCTTTTGGAAAATTGAGAGACCTGGCCGTACCAGGGCCCTACCCCTGCATTCCTGCATGGCTGAGCAGCCCTGCCCCTTTAAACAGAGTTGTGCAGGCTGCAGCCTCCACAGCCGGCCCACTCTCCTCGCCTGCCTGGCCCTGTCCTACACATGGGTAGCTGAGTGTCTTCTCATCCATAAAATCAGATAATTATGGTAATTGCCTCACAGGGTCTTATGAGGATTAAATGAGATACTGTATATGAAGTACTTAGTGCAGCTCTGGCACTGTAAATGCTTAACAAATATTCACTTGTTATTATTCTTATATCACAGCTTGCTAGGGCAGGAAGGCACCCCACCACCACCCCCAATCCTGGGCCTGATTAACACCTGATTTTTGTGCCTTCCCATCTTGCTTCTATTTTATTAGCACATTCCTTTGAATTCCTTTGGTCCTTTGAATATCACCCTTGAATGCTATTCATGAAAACAGAGATGCCAGATACTCCGCCCCCAAACCTATCAACTTCCTGACTTTCTAGATCATTATTACTATAATAGTGATCAACATATTTTATGGGACAGTTTTCTTCGTCTAACCTTTTGCAACACTGCTGTGAGACCAAGACAGTTCTGCCCATTTTAAACATGGAGAAACTGAGGCCCAGACTGGTGAAGTAACTGGCCAAGGTCTAGCAGTCAGTAGGTTGCAGAATCCAGCCTCCTGGGACCCGGGAGCCATTCCAGGGCCGAGTAGCAATCCACAAACAGCACCCAACAAGCTAGTCCATTTCAGAGCCTCCAGGCTGATGTGATTTATTGAGGCCCACAAAACACCGGTGTCAGTGACAACTCCCGCCACATGTCATCTGCGCTGTTATTAAAAATCAATTCTCTGGGGGCAAAGAAGTGCCCGCGCTGACAGTGTGCAATCTGTTATTGTCACTTATTTATTATCCACCTTCTCTGGGGAGTTTGAGAATGGATACATCAGCACAACCATTTCCCTGTTTCCAGTTGAACACAGCAGGAGATGGGCTCGTATCACTGGCCAGGGCTGAAGCCGGACCTGCTCCCCCTTCCTTCTCCTACCATTCCCCCTCAATCCCAACCTATTGTCTTCCATCCCAGTCTAATAGTTCCGTGTGTGGGTTCACTGCCAGGAGGTGGGACCTGCCAATTTTAAGGAATCTGCATGCATCTGTTCATAATTAGAGTAGTGATGTTTGGGGCAACTCAATATGTAAGAGGGAGAGAAAATGTTTGCCCGTCCATCTGTCTGTCTTTTGGGGTGGTGGGGGTGATGGGGTGAACACCACCAGCCTGACCAGGGTTTTCTCTTTCCTCAGCATCATTTGTCCCAGTCTGGCACTACTACTGCCATGAGTTCATCAGCGGTACACGTAACCATACAACACGCTAGCACTTGCTTCTTGAAATACGAATTAGTAGGCTTGCCCCAGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGAGGATTGCTTGAGCCCAGGACTTCAAGACTAGCCTGGGCAACATAGTGAAACCCTGTCTCTACCAAAAAATTCAAAAAATTAGCCAGGCATGGTAACATGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGTGGGAGGATCATTGGAGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAGCACGCCATTGCATTCCAGCCTGGGCAATAGAGCCAGACCCTGTCTCAAAAGAAAAAAAAAAGAGAATTAATAGGCTTTTAGCATCATCATTTTAGAATCATGAGATCTTGTGCATAAAAAGGGATCTTAGAGCACCTCAGTCCAACCATCTACCTCAGTGGGGAGCAACCATTTTCTGCCTAAGGGCCAATTCAGGAAAAGTAAAAATGTCCTTTCTCCCACTAATTACACACCTAGGAATTTAGGTTAAAGAATCATCCAAAATGAGGGAAGATTCTGTGCATTAAAATCTTTGTTGTACTGTTATTTTTAACCTAAATTTTAAGTATTACCTACAAGGGCCACAGTGGGGAAATGTTTAAGGAAACCATGAGGCAACCAGTCAATGAAGTACAATTATTAAAAGAGGCAAAGATGAAAACTAGATAGCAATGTGGGAAAGTGCTTATCACATAGCGTTACATGGAGAAATAAACCTAACTTGTATATATGTTACAATTATAACTTGTAAACATTTATACCTATGAAGAAAGACTGTAAGAGAGCAAATGAAAAAAATTGTGATAGTTAGTGTTTATATAAAGTCATTTCTATAACAAATGAAGGCAAAGTTGAAGATGAATGAAGACCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCAAGACGGGTGGATCACCTGAAGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATAGTGATGTGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCAATTGAGGCAGGCAAGTGGAGGCTGCAGTAAGCAGTGATTGAGCCACTGCACTCCAGCCTGGGTAACACAGAGCAAGACCTTGTTTCAAAAGAAATAATAAATCAATAAAGATGAATGAAGATGGTAACATATTTACAACTGAGGGAGTTGGAAGAAAGATTGGCTTTTTAAAATCAGGAATTACATTATCTGCAACTGCATTTGAACATTTGTATATTCTTTCCTCATTTCTGAGGGGTTTCATTCTTTTAATTAAACTTTCAGAAATGACCAGAGACCCAGAGATGTTGGGTGTTTGCGGCAGCAAGAAGAATGAGCATCAAGGTTTAGTTTGGGCGTAGACAAAGGCCAAAAAGTGATCTGGAAAGCAGGAAGAGAAAACTGACATTTAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGGTGGATATGAATACATTTCAGGAGAGCACAACAGGAGGGTGGTCTTTTAGCCCTGAGTACAAAACATTGTGTGGAAAATGCTTTTTCTACTTGGCTCCGAATCTGAAAATAGCGAAAAGAGAACATTCTTGTGGACATCTTCATCCATCTTAGGGGATCCATGCATTCCCTGATCTTTGCTCCACACCAAGTCACATGCCTTGTATGCGTGTGGTCCCAACTGTCTTGCCCCAGTCGCAGGAGGGCCACCTGGAATCAGTTAGCTCTGGGCAGGCAATTTCAGTGTGTGCTCACGAAGGAGCCAGTGGGATTATCATTCACCATCCTCAGTATCTTTAGCTCCTAGTCCCCGAAGTAAGAATTGTGCTGTTTATACCCACGGGGCTGTTCATCACTGCTCTACCAATTGCCTGAGTTCTCCTTAAAACATCCCTGTAAGGGAGCCCTTTGCTTGATTACCTTCTGAGACAAAGAGATCACTCCCTTACCAGGCAACTCTATTCCACTTTTGACCAGCTATTAGAGCATCAGAAAATTCTTCTGCTGAGCCAGAAGGTGACTCACTGTGACCTCCCAACCATGGTCCAGGGTTGGCACTTTGACATCTGTAAAATAAAAATAAGTAAACAAAAGTTTAATTGCAGAATTTAGGATTGAAGAGTGAATATTGAAAATTTTTCTGTCCAAACGTTTCATTTATAAGAAGAAAAGACAGGCCGGGTACGGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATATGGTGAAACCTCGTCTCCACTAAAACTACAAAAAATTAGCCGGACGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATGGCATGAACCTGGGAGGCGGAACTTGCAGTGAGCAGAGATCACGCCACTGCACTCCAGCCTTGGCCACAGAGCGAGATTCGGTCTCAAAAAAAAAAAGAAAAGACAGATTCAGAGAGGTTTAGTGACTTGTTCAAGATCATTGTCTTATTCATCCTTTCCTGAATACCTGCTACCGGTTAGTTGCTGTGCTTAACTCTGGAGGGGGAAAGAAAGCAAACAGTGAATGAGACACAATTGTTGCCCTCAGGGAGCTCTTGGTCTAGAAGGGGAAATAAGTAAATAAGCAACTACAACACAAGGCGATACCTGAAAGAAGAGCCATGGGGATACAAGTGAGAGGCACCTAACCCAGTCTTAGCCACCCAAAAGGCTTTCTGAAAGGAAGGTTAATAATCAGCACTGACATTCATCAAACCGTGACTATGTGCTGCACAAAGGGCTAAGTGCTTTAGTTATGTTATCTTAGTCACCCTCTGCCTTGTGAAGGATATACCGCTGTTATCCCCATTTCACAGATCAGTAAATAGAGGTTGAATGAGATTAAGTAACTTGCCCAAAGTGATGCAATCAGTAGGTAGTAAAGTTGGAATTTAAACCCAAGACTATTTGTTTTCAGAATCACTCCTCTTAACTTGTGCTTCCAGGACTGAGACTGAGAAACCAGAGGGGGTTACCTAAGTAGGGATGGGAGTGAAGAACATTCTAGGCCGGGAGAATATAAATGCCCTGGACAGAGGCCCTGAAGTCAGGAAAGGCATATGCACTGGGGGAATCACAAGAAGCTACAGGTGTGGCTGCAATGTGGCTTCTGGGGGCAGGAGTGGGAAGAGATGCTGCTGAGTAGCCCCAAGGCACAGGCAGAACCAAGGCTGGGACTCACCTCTGGGCTCCTAGCCCAGTGCTCTTTCTACCACATTCTACCTGCTTCCCCATCGCAGGCTAGCATCTGTTTTTATCTGCACCCATTTCAGACTGGAGGGAGCTGGCCTATGTAAAAATGAGGCATTTTCTTCCTCACCCAGAGAGGCCTCTGATGGGAATTGAGGAGTGGGATGAAATGGAAGATGCAGAGAGAAAGGGGACAGGCGCTGACCGCTCTGCCAAGATGCAATGTCTCCTCTGCAGTCCTGGAATCAGGTCACAGGACTCACCACGGCCTTTGAGACATACAAGCTGCACACTTTCAGGCTTCTACCCTATGTGGGTAACTCCCAGAGGACTGGCCCCAAAATCCACTCAAAAACATAGAGGAGGAGTCATGACAGTGATAACAATCATCATAGCTAATGTGACTGAGTGCTTCTGAACCACTGGCATCTGGTCTTTTAATGCTTACAGCTAGCTTATGAAGTGGTATATTAGCTTTCCTCCTGGGCAAAGAGGAAGAAAATCAGTTCAAACCACCTTAAGCATAAAGAGAATTTATCAACTCAGATAACTGAAGAAGGCACTGGAAGATACCGGGCTCTAGGGCTGGATGCAGGTACTGCAATGATACTGTCAGAATGTGTCTGTTATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCCCAAGGTCAAGAGATCGAGACTATCCTGGCCAACAGGGTGAAACACTGTCTCTACTAAAATTTAAAAAAATACAAAAATTAGCTGGGCATGCTGGCGCACACCTACAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTCGAGGTTACAGTGAGCCAAGATCATGCCACTGCACTCCAGCTTGGCAAGAGAGTGAGACTCTGTCTGAAAAAGAAATATGTAGGCTGGGCGCAGTGGCTCATGCCTGTAATTCCAGCACTTTGGGGGGCCAAGGCAGGTCGATCACCTGAGGCCTGGAGTTCAAGACCAGCCTGGCCAAGATGGCAAAACCCCATTTCTAATAAAAATACAAAATTAGATAGGCCTGGTGGTGCACATCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCGGAGAGGCAAAAGTTGCAGTGGGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAAAGTGAGACTGTCTCAAAAATAATCATAAAATAAAAAATAAAATGTACCTCTGCCTCTCGCCCTGTTTTCCTAAGTGGATTTCATTCTCAGGCAGTCTTTCTCTATTTAAGACACAGAGGGTCCTGATGGGCTGAAAGTTTACATTCTAGCAGCTTAGCAGCCCCACAAAATTAAACTGCTTCTGCCCTCATCGTTCCAGAGAGAGCCCCAGAAGTGTCTCTCCTTGGCTCCCTTAGGTTGCATGCTCAACCTCACACCAATCACTGTGACTCTGATTGGCCAGACCTGAGCCATAGGTTCATACAGAGGCCAAACCACTGGGACCAAGAGGTGGGGAGGGGTAACCCCCAGTAGAAAACAGAGGAACGGCTACAGAAAACAGCATTGATGCTGAGAAACCCACATCCCCTAAAAATGTCTACTATATGTAGTTACTAAGAATTCCTCCATTTTAGAGATGAAAATATCTGAGAAACCAAAATATCTGAGAAACCAAAAAATCTGAGAAACCAAAAGTCAATTGTCTCAGCTCACACAGCCAGTATCAGACGAGGGATTCACACCCAGGCAGTCTGACTCCAGAGCCTTGGGTTCTTAACCCCCAGATCACCTGGGAATAGCTTAGCCTGCTCAGAAGAGAATTCACCCACCCACACCCACATTTAGAATGAGGATAGTTCCCACTGTTTATTGTATTAACCGTAGGACCTAGGGGTTCAGAGACCCAAGGTTCGCGCAGCCCAGAACTAAGGAATGGTTATGCCCTAATGTTGCCCTGATGGTGCCCTCATCTGCATTCTGAAATTCTTAAGTTTGCCTTTAACATCCCCTAAGAGTTAGGCAAAGAGGAGGAGTTCCAAGTGCTTGAAGATGAGCCACTGAGAGTTGACAGTTGCTTGCCAGCCCAGCCGCTGGGAGGCATCAGGGAGAAGGGGAGGAGAAAGGGGAAGGAGCACTCATTCTCCCACTTCTCTAGCATCCTTTAGGATGGTTGTTTGACAGGCAAGAGTACTTCTTTGGGGGCCAAACCAGGATGGAGAACCTGCAGTGTAGGCGGATTTAATGAGTTGTCCTAGTAAATTATAATCCTGTTACTCTGCAGGGTTTTTTTGTTTGTTTGTTTGTGATGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTACAATGGCACAATCTTGGCTCACTGTAACCTCTGCCTCCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCACACTCGGCTAATTTTTGTATTTTTAGTAGAGAATGGAGCCTGACTTGCAGGTGTCACAATGCTAAAGCTGCCCTTGGGTCCTTCGGTGTTTTAAAGTTAGGCCTCATGCCTCTCCAGGGGCCCAGGCCTCATTTGGAAATGACTAACAATAAAGCTGGGTGCCTATGCAAAACAGCAAGCAGCCATGAAGCCATGCAGGCAGGGGCTGGTATGATTCATAAATAACCTCATGAACTAGAGGCTAAATGATGCTGATAAAAGTGTTAGGAAGTGCTTCTAGCTCTTCCTTACTCGGGGAGGTGAGAAGCTATCGTGAACACTCTAGATGGCTGTTTGCCATCTTCCTGCTGTCCTAGCTGCCTAAGCACTGAGGCTCACTTTCACCCTGAGAATTTCACCAGAGAACTGTGAGGTGGGAGGAGAAGGAGCTGATGGTGATGAGGATATCAATGGAGGGTAACTAAGAGGAGAAAGAGAAGAGCAGATTATATGGGAAGAGGAGAGAAATAAGGGCCTTGCCTTAAAGCAATAGGAGAAACCTTTCTAAACCCTTGCTACTGGCGTCAGCATCACCTCAGAGTTTGTCAGAAATGCAGAATCTCAGGCCTCACCTCAGACCCACTGAATCAGAATCTTTGGAAGTGGGGCTCAGGAATCTGCATATTCACTAGCTTCCAAAGCTCACTCAGTGTGAGAGCCACTGTTCTCTATCAAGAGTAATTAGGCTCATGTCTCTGTCAGCTGAAGACCAAGGGCAAGCTAACTTCAGTTGAAGGGAGAAGAAGAGCAAATTCATTCGTTATTATTCCATCTGTACTTCCACTGTCAACACTAATCGTCTCTTTGTTCTACTAGGACTCACTGCCTGCAATAAAGTTGTTAGTCCTTACCCTGAAGGGTGATTATTGCCAACACAGGTGATGGTGCCCATCAGTCACTAAAGAAGCCTTTGAGTTTCTATTAATTTGCAGATTTTTTTATGCAGTTGATGATTAATCCTTTAATGGAGAATATAATCCATGCGTTGTGGATTTGCTCGTGTTGCTACTTGAGCACGGAGCAGTGTTCATTGAGGTTTTTCATGCACCTATCCTCCAGGCATTTGTGGAAGGCTTAGTATATGGCACCACTGTGTAAGTGAGAATAGCTCCTAGCTGCCTACACCACAGGGTGGAGAGAGGCATGATTAATACCAAGTGGGGTGCCCGGCCCCTCCAACGTGCTGTGGGAAGATGCACTCAGGTGCACACAAGTGCCAGACTCGTGTATGTGTGTGGCTGATGCCAAAGCCGTTTCCATAACAATGAGTGTTCGGCTCCAGAGACTCTCCTCGGGAGCTGAGGACCCCCTCCCTCTGTCACCAAAGCTGGGATTGGTAGCATTTCTCAACGTGCCTAAGATCTCTTTAGGTAAATACGAAGGAAACTAATTTACTGACCTCCTTGATACAGATACCCTTCAAGACTCTTTCACAAATATTAATATTGATTAGTCATTTAGCACTTAGAAAATGCTGGCTCTCTCTACGTGGATTAACACACCCATGACAACTTTCCGTGGCAAGCCTTTTTATTCTCATACCTGTTTTACAATAGAGGCTGAAGCACAGAGAGGGTAAATTGCTTTGCCCTTAGTCACACAGCTGGTAAGCGACAAAGTCAGGTTTGACTCACACAGCCTGGCTCCAGAACTTCCGGTCTTAAGCACAGCTCTTCATATGATCTCTGAAACTCCAGTAACTCCCTTGGGTCTCTTCCTTTCTCAGCTGCAAAAATGAAGGCCCAGAAAAGTGACGTAACTTATCCAGCATTCCACGGCTAAGAGAGACTGGTTTCTGATTTCGCCTCAGGTCTATCAGATTGAAAAGTCCACCCCCTTCTTCCGCAAACCCTCTACTCCCTCCATCCTTGCTGCTGAGCTGGGCATAGAACATTCATGCACCCAGAGCAAAGGGGGCAGCAGCTACTGCTAGGAGCAGTGGGGCTCTGAGCAAAACTGAAGGGTGGCAGGGCCAGGCACTGGAGGCCCTGAGAATATGCTAAATTCAAATTAGTGGATGCTAACCTTCCGACCTGTGCCCTCTGCTTCAG
Seq C2 exon
AACCCTCCATGGCAATGACATTTCCAGCGTTCCTGAAGGCTCCTTCAACGACCTCACATCTCTTTCCCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347:ENST00000519560:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains