DreINT0154458 @ danRer10
Intron Retention
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21626603-21629381:-
Coord C1 exon
chr15:21629250-21629381
Coord A exon
chr15:21626735-21629249
Coord C2 exon
chr15:21626603-21626734
Length
2515 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGCTCTTTGCTCTTCTACAGCCA
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTCCACTCTGTGCACACTATATGGAGTTTGTGTGCAGAAATCGAGCGCAGTGTCTGTTTCAGTCTCTGGTTTGTGACGGGACCCGGCACTGTGCTGATGGTTCTGATGAGGACCCCATTTATGCTGGATGCT
Seq A exon
GTGAGTCCAATGATTTAATATCTAAAATGTGAAAGTTAGAAACCGATCATTAAAGGAACATGTATGCTTTTAAAACTCTCTTCAGTTTTACAAGTGTGCATTTATTCATTAATTCATTCTTTTTCTTTTTGGCTTAGTTTCTTTTTGGCTTTATTAATCTGGTGTCGCCACAGTGGAATGAACCGCCAGCTTATCCAGTATTTGTTTCCCTTCCAGCTGCAACCAATCACTGGGAAACATCCATACACACTCATTCACACACAATCACTTCAGACAATTTATCATTTCCATATCACCTTAACAGCATGTCTTTGGACTTGTGGGAGAAACCGGAGCACCCGGAGAAAACCCACTCAACACGGAAATTTCAACTGACCCAGCCGAGGCTCGAACCAGAGACCTTCTTGCTGTGAGGCGATCGTGCTACCCACTGTGCCACCGTAACGCCACTGTGCATTTATTTAATTACAAATACAGTAAAACAACAATGGCCCAATCCCAATTCTTCCAATAAAAGCCCTTCCCTTTAAGGCTGATTTATACTTCTGCGTCAAACACTGGCGTATGCTACGGCGCTGACGCATAGCCCTTCGCCGTGGCCGTGGCCGTCACTGACGTGCACCTCTCAAAAAATGTAACTACACGTCGCAACGACGTGTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGCTGACGAGTCTGGGCGGGACCGAGAGCCGCGCGAATGGCGAGAGCGACTGTTTACAAGTGTGGGGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGCTGCATGTCCGCCGGTTCCTGCCTCAAAATGAGCGAGTTTGAGCCACTTGTACATCCCAGAAGTGTTCAGGAAAAGCTCAAAACCAGAGAAGAAACTCGACACAGAGGAACATTTACACCTCACTGCCAACTAGCGTTTCGGAAGTGTTAATACAGACCGACAGAGACAGCGCGCAGAAGTATAAATGCACAGCCACGCGCGTTGCATGCGCCGTGGGTCACGCCGGTCACTTGATGCAGAAGTATAAACCAGGCTTTACACCTACCCCTCGTTTTGCGTTTCCACCTGAAGGGGTAGGGGTGTCCATAGCTTGAAGGCGTAGCGCTAAGGGGAAGGGCTAAATTTTGCTGTCTATAATAATAACTTTTGTTTAGTAGTCCCACAACATACTTTCACATCTGTCACTCGAATGCCCTGTCAGAAATGTCTAGTGTCTGGGAATAAGCTTTTTGCAATATCTGAAATAATTTTGATGTTGTTTTCGTGTGTCATGTTGTGAATACACAGTACAGTTGCGAGCTTATTCCCACATTAGATTGTTATGATAACATAATATATGCCTTCAGTGGTTTCCAGAAGATAAATACCAAAAAATAACACAACTGGAATAACTACAGCAGTCTCCATTGTCGATATTATATGAAGTAAGATCTTGCGATGACGTGTGCAGGTGCTGTGGTGGTGTCCCATTTCTTAGGGGGAAAATTTGAAGGTTTTCCCCTTTACACTCTGTTTCAAGGGGCCAAGGGGAAGGGGTAGGGGTAAAAAAAATAAATATGGTTGGGCCAATATTGTAGTATTAAAATTTCATTTAAGTTTTGTCTATTGCAAATAAAGTTAAATAACATTTGTTCCTGTATTTCAAAGCTCAATTTAAATCGCACCCATTACTGTAGACTTTAAATTCACAAGATCCTTCAAAAATCACTATCTCAACAAGAATTAATATAAGCAGTTACTGCAGTTAGTTTGATTTATTAATCAGCATATTATTTAATTCATTTCATAACATTTAATTAATTGACATTGGTATTGCAATCTATGGGTCTGCAACAAAAATAATAAATATCAATGTTTTGTGTGTTTTAAAAAATGCATAATTAAACAATGTTTTATTTAAGTTGTCTATTTTTTTTACATAGCTAATTTATTTAGAAATTAAGTCAGTAACTGTCTTTAACTTTGTTTTTGCAAAGTGAGTAGTAAACTTAATAATGTCAACAGTAATTGGAAATAAAACAACAATAATTAGAATAGTATCTAAAAAAAAAGTAGCGGCTTGGTGGCTCAGTGGTTAGCCTTACAGCAAGAAGGTCGCTGGTTTGAGTCCTGGCTGGACCAGTTGGCATTTCTTTGTGGAGATTACATGTTCTCCCTGTGTTCGCATGGGTTTTCTCTGGGTGCTCCTGTTTCCCCCACAGTCCAAAGACATGCGGTAAAGATAAACTGGAAGAACTAAAATGGCCGTAGTGTATGTGTTTATGTATGTGTGTATGTGTGTGTGAATGCTAAGAGTGTATGAATGTTTCCTATTACTGTTTTGCAGCTGGAAGGGCATCCGCTGCATAAAACATGTGTTGGAATAAATAAGATAAATAAATAAGGGACTAAGCTGAAGGAAAATGAATGAATGTAAAAGTCTGCACGCTCCTAATGTGTTTTGTATTACATTATTCTGCTCTTTGCTCTTCTACAG
Seq C2 exon
CCACTAGTGTTGAGTTTGAGAAAACATGTGACGGCTACAACTTCCAGTGCACCAATGGGATGTGTGTGACGTTGGAGTGGAAGTGTGACGGCATGGACGACTGTGGTGACTACTCGGACGAGGCCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892:ENSDART00000156995:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.6)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]