HsaINT0156832 @ hg38
Intron Retention
Gene
ENSG00000137642 | SORL1
Description
sortilin related receptor 1 [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr11:121588020-121589390:+
Coord C1 exon
chr11:121588020-121588151
Coord A exon
chr11:121588152-121589258
Coord C2 exon
chr11:121589259-121589390
Length
1107 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GATGTTTGTTCCCTCTGTAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGCCCCTCTGTACGCACTTCATGGACTTTGTGTGTAAGAACCGCCAGCAGTGCCTGTTCCACTCCATGGTCTGTGACGGAATCATCCAGTGCCGCGACGGGTCCGATGAGGATGCGGCGTTTGCAGGATGCT
Seq A exon
GTGAGTTGGGGCAGGCAGGGGAGGTGACTCACGGTCACTAAAGAACTTGCATGGGGGTTTGGCCACCCTGGGGTTGTGTCTCTATTTAATAACTGACAGGTCTTGGTTGAGTGTCGAGGGTTTGACCACCCTGGAGTTGCACCTCTATTTAGCTTACATGTCTAGGTTGAGCATCCAAGCTTGCCTTTTCTGAGAAAGACTTTCTTTTGTTGCTTAAGGAATCCTGCTTTTCAGTTGTGGGTGTATGTATAAGGGGCAGGATGGCGAGTGACCAGGGTCTTGGCTCAAGGGTCGCTGAAAGTGAGAGGCCTTTCTTGCCAGTACTGTATCAGATGGCACTCCCAGCGTGCCGTAGCCCCTTACCCTGCTTCGATGATCCTGTCACAACTTGCCCCAATTTGGACCTGTCTGTTCATTTTGCTGCCTGAGCTTTACAGGAGCAGGGGCTTGTTTTGTGCATTGCTATGGCCCTCTCCTAAAATAGTGCCCTTCTTGGAGCAGCTCTTATATTTGTTTCCTGGGACTGCTGTAGCAGAGTACCACAGACCAGATGGCTCAAACAACAGAAATTTATTTCTTGCAAGCCTGGAAGCTAGCAGTCCAAGATCAAGGTGTCGGCAGGGTTGGGTTCCTCCGAGGCCTCTCTCCCTGGCCTCATAGACGGCTGCCTGGCTGCCTTCTCCCTGGCTCTTCACACGGTCTTTCCTCTGTACACATCTGTGTCTAAATTTCCTCTTCTGTAAGGACACCAGGCCTATTAGATTCGGGCCACCCAGATCACCTCATTCTAACGTTTCCTCTTTCAAGCCCTTATCTCTAAATACAGTCCTGTTTCTGAGAGACTAGAGGTTGGGACTTAAACACATGATTTTTGGGAGGATAAACTCAGCTCATAACACGACTCGGTAAAGATTCATGGAATGGATTAATTAACAAAGTGTGTGCTCTGTTTAGATTAGGTTTGGCTTTTGCTTTCAAGGCATGGTTTAGCCAGACAGTCCTTTGCCAGAACTCACTGCTGTTCCCCCTTGCTTCTGGGCACCACTGCTGCTTCGACCCCTCAGCATGGAAGTTCCTGGACTTCATGGATGTTTGTTCCCTCTGTAG
Seq C2 exon
CCCAAGATCCTGAGTTCCACAAGGTATGTGATGAGTTCGGTTTCCAGTGTCAGAATGGAGTGTGCATCAGTTTGATTTGGAAGTGCGACGGGATGGATGATTGCGGCGATTATTCTGATGAAGCCAACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137642:ENST00000260197:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTGTACGCACTTCATG
R:
CGCAGTTGGCTTCATCAGAAT
Band lengths:
262-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains