Special

HsaINT0156832 @ hg38

Intron Retention

Gene
Description
sortilin related receptor 1 [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr11:121588020-121589390:+
Coord C1 exon
chr11:121588020-121588151
Coord A exon
chr11:121588152-121589258
Coord C2 exon
chr11:121589259-121589390
Length
1107 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GATGTTTGTTCCCTCTGTAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGCCCCTCTGTACGCACTTCATGGACTTTGTGTGTAAGAACCGCCAGCAGTGCCTGTTCCACTCCATGGTCTGTGACGGAATCATCCAGTGCCGCGACGGGTCCGATGAGGATGCGGCGTTTGCAGGATGCT
Seq A exon
GTGAGTTGGGGCAGGCAGGGGAGGTGACTCACGGTCACTAAAGAACTTGCATGGGGGTTTGGCCACCCTGGGGTTGTGTCTCTATTTAATAACTGACAGGTCTTGGTTGAGTGTCGAGGGTTTGACCACCCTGGAGTTGCACCTCTATTTAGCTTACATGTCTAGGTTGAGCATCCAAGCTTGCCTTTTCTGAGAAAGACTTTCTTTTGTTGCTTAAGGAATCCTGCTTTTCAGTTGTGGGTGTATGTATAAGGGGCAGGATGGCGAGTGACCAGGGTCTTGGCTCAAGGGTCGCTGAAAGTGAGAGGCCTTTCTTGCCAGTACTGTATCAGATGGCACTCCCAGCGTGCCGTAGCCCCTTACCCTGCTTCGATGATCCTGTCACAACTTGCCCCAATTTGGACCTGTCTGTTCATTTTGCTGCCTGAGCTTTACAGGAGCAGGGGCTTGTTTTGTGCATTGCTATGGCCCTCTCCTAAAATAGTGCCCTTCTTGGAGCAGCTCTTATATTTGTTTCCTGGGACTGCTGTAGCAGAGTACCACAGACCAGATGGCTCAAACAACAGAAATTTATTTCTTGCAAGCCTGGAAGCTAGCAGTCCAAGATCAAGGTGTCGGCAGGGTTGGGTTCCTCCGAGGCCTCTCTCCCTGGCCTCATAGACGGCTGCCTGGCTGCCTTCTCCCTGGCTCTTCACACGGTCTTTCCTCTGTACACATCTGTGTCTAAATTTCCTCTTCTGTAAGGACACCAGGCCTATTAGATTCGGGCCACCCAGATCACCTCATTCTAACGTTTCCTCTTTCAAGCCCTTATCTCTAAATACAGTCCTGTTTCTGAGAGACTAGAGGTTGGGACTTAAACACATGATTTTTGGGAGGATAAACTCAGCTCATAACACGACTCGGTAAAGATTCATGGAATGGATTAATTAACAAAGTGTGTGCTCTGTTTAGATTAGGTTTGGCTTTTGCTTTCAAGGCATGGTTTAGCCAGACAGTCCTTTGCCAGAACTCACTGCTGTTCCCCCTTGCTTCTGGGCACCACTGCTGCTTCGACCCCTCAGCATGGAAGTTCCTGGACTTCATGGATGTTTGTTCCCTCTGTAG
Seq C2 exon
CCCAAGATCCTGAGTTCCACAAGGTATGTGATGAGTTCGGTTTCCAGTGTCAGAATGGAGTGTGCATCAGTTTGATTTGGAAGTGCGACGGGATGGATGATTGCGGCGATTATTCTGATGAAGCCAACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137642:ENST00000260197:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0005713=Ldl_recept_a=WD(100=93.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTGTACGCACTTCATG
R:
CGCAGTTGGCTTCATCAGAAT
Band lengths:
262-1369
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains