DreINT0158008 @ danRer10
Intron Retention
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13812235-13816640:+
Coord C1 exon
chr21:13812235-13812320
Coord A exon
chr21:13812321-13816485
Coord C2 exon
chr21:13816486-13816640
Length
4165 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GTGTGTTCTTTCCATGGCAGTGC
3' ss Score
8.56
Exon sequences
Seq C1 exon
GATGCTATCGACGACAAGCTGGACACCAAACATTATCCATATATCTCAACACGCTCTTCCTCCTCCTTCAGCACTTCTGCAGTCAG
Seq A exon
GTACATGTGCAAGTCACGGCTTTAGTTTACTAAACAGGAAGTAAAATACATTTAGATCATTTTTTAAGTCGAACAAAATACAGAGGAGCAAATCTTATTTTTAGTCCATTTTGAAGTCTTGATACACTCACCAGCCACTTTATTAGGTACACCTGTCCAACTGCTCGTTAACGCAAATTTCTAATCAGCCAATCGCATGGCAGCAACTCAATGCATTTAGACATGTAGACATGGTCAAGACGATCTGCTGCAGTTTAAACCGAGCATCAGAATAAAGAAGAAAGGGGATTTAGGTGACTTTGAACAAGGCATGGTTGTTGGTGCCAAACGAGCTGGTCTGAGTATTTCAGAAACTGCTGATCTACTGGAATTTTCACGCACAACCATCTCTAGGGTTTACAGAGAATGGTCAAAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGAACACAAATGCCTTGTTGATGAACAGTAACTCAAATATCCACTCGTTATAACTGAGGTATGCAAAAGAGCATCTCTGAACACACAACACGTGCAATCTTGAAGCAGATGGGCTACAGCAGCAGAAGACCACTCTGTTAGCTAAGAACAGGAAACTGAGGCTACAATTTTTCACAGGCACACCAAAATCGGACAATAGTAGGTAGAAAAAACTTTATCTGGTCTAATGAGTCTCAATTTCTGTTGCGACATTCGAATGGTAGGGTCAGAATTGGGTGTCAACAACCTGAAAGCATGGATCCTTCCTTGTAGCAACGGTTCAGGCTGGTGGTGGTGTAATGGTGTGGGGGATATTTTCTTGGCACACTTTGGACCCATTAGTACCAATTAAGCATCGTGTTAACGTCACAGCCTACCTGAGTATTGTGCTGACCATGTCCATCCTTTTATGACCACAGTGTTTCCATCTTTTGATGGCCACTTCCAGCAGGATAACGCACCATGTCATAAAGCGTGAATCATCTCAGACTGGTTCTTGAACATGATAATGAGTTCACTGTACTCAAATGGCCTCAACAGTCACCAGAACTCAATCAAATAGAGCACCTTTGGGATGTGGTGGAACGGGAGATTCACGTCATGGATGTGCAGCTGATAAACTTGCAGCAACTGAGTGATACTATTATGTCAATATGCATCACCAAAATCTCAGGAATATTTCCAGTACCTTGTTGAATCTATGCTACAAAGGATTAAGGCAGTTCTGAAGGCAAAAACAACTCGGTACTAGTAAGGTGTACCTAATAAAGTCGCTGGTGAGTGTATATTATTTCAGGCAATTAAGCTTTCTTCCAAAATAAAATTTAAATTAATTAATTAAAAAAATTTGCAAATATCTAAATTATTGTAATATTGAGATGTTTTATAATCATTTATTATAAATTATACCTAAGACATAAATTATACCTTTAAATTATGCCTAAGACATACACACATCCATGTATAATTTAAATATTTAACATTATATAATTTAACTTTAGTATTGGCAGCGTTGTTTTAATATAAATATATTTTAGATATATATATTTTTTATAATTATTTTTTTTAGGGGTTTTCACCTTTATTGGATAGGAAAGTTGAGAGAATTGACAGGAAAGCATGGGGAGCAGAGAGAGGGAAAGGATCGGCATAGGACCATGAGGCGGAATCGAACACGGGTCGCTGTGAGCACTGGAGTGCATGTGTCGATGCCCTTACCACTACACCATTGGCGCCGACTAGATATTTTTTTTAATTCACATACCAGTTTAACAAATAAGGAACTCTTCAAAAAGAGGTTTAATAGGTTTTGCTCACTATCACACACACACTGAAAATGCAGATGCACTCATGTATTTTTTACCGCATAAGTAAAAAGACAGAAGTAACTTAAATCAATAATCATTTGTGCACAGAAGGGTAAGTAGAACACTGAGATCAATACCGTGATTGGTGGGTGTTTTGCGATGTAAGGTGGGGGTGAACACCAAGCACTTACAGAAGCAGTGGAGACTGGAATATTTCCTCAGGGTCAGCAGTAATGATCCCGGCACACTCTTCTGCTGTCAGGACAAACAAACTATAGCACAGCTCCTGTAAACAGTAGCAGAGTCAAAGCAGGAAGTCTCTGCCTCCCACACTGCTGACTCCCATTGCGCAGATATTAATTGGACTGAAGAACACCAGTGCTCAATGAGCTTGTAGATACTGTAACTCTGCTGTTCCTTATAAATGCACTATTTTATTAGACACATTCTTAACTTTATCTTATAAATGTGTAGAGAAATGTGGCAAAGATAAAGGATATTGGGTAAAAGATCTAGTGCAGTCAGTCTCTAACTGCTGCCTCTAGGAGGTCTTAAATGGTACTGCAATAACAGATACCTTCAAATGACTCATAATAATGCATCCATCATTGTTTACTAAAGCCGAGTTTGATTGAGCTGTGATTGTTTTCCATACTTTTTACCCTTGACTACTCCTTTTACGTGGAAAAACGGTGTGATTCATGGGTGTGAACCCAAGTTCAGAAGACCATGTTCATGCTAAGGCTAGGACACACCAAGTCCACGATCTGGTGTTGGGCTTGGTTTGTCCATTGGCCAGCATTGGTCCAGCTAGTTAGTTTGGTGTGTTCTACACGTCACTTTTCATCAGATTAACTTCGACGCTTGTTAGCCTTATTAAAAACTCTAGAATACACAAGACATGTCACTCCTATATTTATGAATTGGGAAAATTTGTAATAGTCAATATGGTGAATAAGGCTCTGCCTTCTAGTACAGGGGCCAATCACTGATCGCTAGAGACTGACGATTCTCCGGGGGAGGGCATCAAATGTGAGGTTCTGCAGATTTTGTGTGATTCGAACGTTTAAAAATTAACCTCAAGATACAGTTGTATAATTTCATTGGGGATTCCTAAAATGAAATTTAATCGTAAGCTTGGCAAGCAATTTTGGAGAATTTGACGTTTCCCCATTTAAACAGAATACCTGAGCCTACTGTCTGAGAGGCATTTAAAAGAAGGCCACAAAGTGAAATGATTTGCCTTAACGGGAGTTTGGCTTGATTCAGCAAGTAGACTTGCGTTGGCTGAAGAGAGTGCTCTGACTGGTTATTCATCATGGAATCAGAGCGCAAATGTGACAGTAAAGAGGCGTAGCAAGTAAACAATTCAAGTCAAGAAGGAACACAATGAGGCTGGCTGTATTTCTGAAATACTTGAAAACTATATGGATTATTAGCTTATCAAACCTATTTGCAGGAGAGAATGCCTCTCTGGTGAGAAACAATTACTGCGATAATGGCACTTAATGCTGCTTTGTTTACGTTTTGCTCGCGAACGTCTGAAATTCTGGTTTCCAGTTGTGAACAATAAAAAAAAGATACTGCCCTCTTTGGGTGCCCACAGTAAACTCTCTTGTCTCAGTCAGCTTTGGTTCATATTGTGTGTTCCCGGGGAGCTTTTTGGTCCAGACGAAACAAGACATGAGGTGACAACACAGTTGGGTTTTGTCAGCGCTAGTTGTTGCCGCTTGTTGTTTCTGGCCTTTAGCCGAATGAATGGGTGGTTTGGTGGTGTTTGACAAGGTGTACGCGATGTATTTGAGGACCGGGAGGGAGATGCGCAATTTCCGGGAAATCATCACTTGTTTCCGGGCATCCCGGAGTCTCTCATTTGCGGGAGACTCACAAAACTTCCGGGAGACTTGGGATGTATATAGCCGTATATATAGCTTCATATAGCCGTATGCCTATTACATATCTATAAAATACAGTGAAATAACTGGGCTAGGATCGTATTGCTTTCTCACTACAATTGATTCGCTCCAGAGTTGGTTTCAACTGAGCCGAGACAACCTCATTCAAATGATCTCGGAATGATTGTTTTGGCGCGGATCCGAGTGCGATTGCTGGATTCACATATGCCAAATGAACCGTGCTAACTGGGGAAAGAGACAGGTTATGAAACAAAAGTCTAGGTGTGAAAGCACCGTCAGTCATGCTTTTGTTAACCTTCAGTGAGCCATTTTTAAGACAGAACCCAAAGATACAAAACAAAAGATTTTTATGACACATATTTTGCAATTGAACTACCAAACATCCGTCTTGTTTTTGAGGAACATATCCCTAGTTGTTCCTAATAATTATACACTTGTGTGTTCTTTCCATGGCAG
Seq C2 exon
TGCCCGATATGGCCACTGGCACAAGAATAAAACCCCTGGAGAGTACCGCACAGGCCCTCGCATCATGGTCTTCATCATCGGTGGAGCATCCTTTAGCGAGATGCGTTGTGCCTATGAGGTCACACAGGCCAATGGCAAATGGGAGGCCATCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994:ENSDART00000015629:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(26.7=100)
A:
NA
C2:
PF0099518=Sec1=FE(48.6=100),PF084476=PAS_3=PU(23.4=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]