HsaINT0161391 @ hg38
Intron Retention
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127680157-127682560:+
Coord C1 exon
chr9:127680157-127680242
Coord A exon
chr9:127680243-127682405
Coord C2 exon
chr9:127682406-127682560
Length
2163 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCTCTCTCTCTTTCTCAGCGC
3' ss Score
11.85
Exon sequences
Seq C1 exon
GACACTATTGAGGACAAACTTGACACCAAACACTACCCTTATATCTCTACCCGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAG
Seq A exon
GTAGGTGAAAATCCCTTAGCAAGGACAGAGGGGAGCCAGCTCTGGTTGGATGTCAGCTCTGCGGCAGACCCACTGTACGGCTGTGTGATCTACCAGAGCCCTCTCGCTGCTGCTCCCCACAGCTGCAGCGTGGGCCAGGTCTGCACAGTGGTCCCACGGCCCTTCCCCCTCCAGCATCCCGTTCCTCTCTGATTCATCCCTCACACCTCCTCCCTCGCTCACTCTGCATCAGCCATGCCAGCTTCCTCGCACTTCTCAAACAGTCAGGCTTACGTCTGCCTCAGGACCACTGCACTTGCTTTTCCCTCTGCCTGAAATTATCTGTCCCCAGATATGTCTGCATGGGCTGGGCACAGTAGCTCACACCTGTAATCCCAGAACTTTGGGAGGCCAAGGCGGGTGAATCACTTGAGGTCAGGCATTTGAGACCAGCCTGGCGAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGGACGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGTGGTGAGCTAAGATCGCATCACTGCACTCCAGTCTGGGTGACAGAGCGAGACTCCATGTCAAACAAAGAAAAAATATGTCTGCATGGCTTGCCTCTTATCTCCTTTGGTCTTTAATCAAGTGTTACCTTCTCCAATCTTCCCTCACCACCCTGTTTAAAATTGCAGTGCATCAGCGTTCACAGCTTTACTCATGCAGTCCAAGTGTGGAGCAGCCCACATGTCCCCCAGCTGACGAGTGGGTAACACACGTGGTCTCTCCACACAGTGGCTCCTGAGAACAGTCAGGGCTGAGCACGCACTCGGGATGGTAGAGTTAGCAGCTCGAGAGGGCGACCCTGGCACTGCAGCTGTGCCACACCTGGCACCCCAGGATGTGCACATCTCTGTCCCTCCTCTCCTGCTTTCCCCACCTGTCTTCTCTTTTGCGTCTCTTCTCTCTGTGTTCACTTTTGGCTTCAGCTGGGCCAGAGGCCTGTGGTGGCCTCTGTGTCATTGTGCAGCCCTTCTCATGGCAGCAGAGGTAAAACGTTTTTTGCCAAATATGGCATAAAATACAAAATCCCAAGTAGCGCCACAGTCAGGCTGGGTGATGAGAATGGGATATCAAATGATTGCACAAGGAAAGAAAGCAACTGTGAGATTCTCTGTTGGCCCAAACGGTGCCCCAAACGGTGTCTTCCTGGTTTGGAAAGTGACTGTAAAGCTGTCATGAGTCAGGAAGAAAGGCGACGCATTGCAGTGGCCAGAAAGGACTTGCTCCTTTCATCTCATTTTTCTCATTTTCTTAACCTGGGAACAACCCATTTATTCCTGTTTCTCAGTCAAAGGTAAAGAGCTATTGAAGGAAGCCCAGGTTCAGAGGGAGGCCCCTCTGGGAGCAGCCTTGCCACTGAAGTACTCTTCCTCCCTGGCTTCGCCGCAATTTCCAGGAGGCAGCTCAGGGATGGAGAAGCCTCCCCAGTGGTGCCCGGACAGGGTTCCAGGGCTTCCCTGTGCTTGGCCCTATAGCACAGAGCTCTTCATCAGACCAGGATTTGGGCTCACTTCCTTCTCCCCACCTGCCCCATTCAATGATGACCTCTTGGTCAAGGCCTGTGTCTCCTTAGGATGTGGTACTGGGGAGGCCCTGGCCTCCAAGAGGCACTCACTCAGTACATGTTTTCAAGGGATCTATGTGCCAGCCTGAAGGCAGATCTTAGACTGTCATCACTGTGCACTGACAGCAGAGTGTCCCAGGCAAGCTCAGAGGCATGTGTGACTTGGGGTAGACGTCTGCATGAGCCTCTAGCAGGGGGATGCTACAGAACTTGACCCAGCAAACGTCAGAGCTGAACTGATCCTGTCTGTTGCCTGCATGTTTCTAAGAGTGACAAGGTCACAGCAGCACAGGCATTCATAGTGACTCTTCTCCTGGGAACCAATCCACTTGAAAATTGCATTGCAGTGAAATTTCAGCCAGCACTCACTAAGCATCTACACTGTTTGGGGCACAAGTGTACAGACCTAATAAGTAAACAAACCACTGGGGTATGAAGCACTAGATGCCGTGAGTGCAGATAAACTGACTGACATTCTCTTTCTCTCTCTCTTTCTCAG
Seq C2 exon
CGCCCGCTATGGGCACTGGCATAAGAACAAGGCCCCAGGCGAGTACCGCAGTGGCCCCCGCCTCATCATTTTCATCCTTGGGGGTGTGAGCCTGAATGAGATGCGCTGCGCCTACGAGGTGACCCAGGCCAACGGAAAGTGGGAGGTGCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854:ENST00000373302:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(28.6=100)
A:
NA
C2:
PF0099518=Sec1=FE(53.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains