DreINT0158059 @ danRer10
Intron Retention
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1673314-1675541:+
Coord C1 exon
chr23:1673314-1673394
Coord A exon
chr23:1673395-1675405
Coord C2 exon
chr23:1675406-1675541
Length
2011 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGATTTCTGTGTTTTTCAGGAT
3' ss Score
11.94
Exon sequences
Seq C1 exon
AAAACCGTGCACCTACATTTAGCCGAGGATCTGATGGGCCATTACCAGAAGAACGTGGAGAAACTCTGCAAAGCGGAGCAG
Seq A exon
GTAAGAGAGTTTAGACCTATTTGATCAGCCCACTTGAATATTTGATTAAAAATTCAGCCACAAATGGTGCCGTGCAATGCACAGATCTAATATAGGGAGTCAACGAAAGTTGACACAATGGGCCCTATCATACACCCGGCGCAGTGTGGCACAAGACGTGGCGCAATAGTCTTTTGGTAGTTTCAGCTTGGCGCAAGAGTGGTTTTGAGGCGTTGTGCTGCGCTGTTTAAATAGCAAATGCATTAGCGCTCATTTGTGCGCTCATAGGCGTTCTGGTCTAAAAAGGAAGGTGTTCTGAGGCGCACTGCTGGCGTGTTGCTATTTTGAGAAACTATAATAGATTTTTCATTAGACCAAAACAAACCCGGTGTAAACTCCAGCGCAGAGTTGCACCTCGCTTACACACTGCTTAATACACACAAGAGAGCAATAGGCAAATATCTTTCCATATAAAAAAATGTAAATATTAAGGATATATATAGGATATAATAAGAATAGATATAGGATATAAATATAAAGGATTAAAATATTACAAACATATTATTTTCTAGCCTACATAAATATGAAAAATCACTGCTTTTATGTCTTCTTCATCTCGGGAGGCTTTTTCAGTTCATTCATAACAATTTGCTTTTGTATAATGTTATTATTATTAGCAGTGTTATTTATTATATCCATATTTATATTTGTTTTATTAAAAACAAGCTTAGATTTGTCCACCTGTCAGGTTTTAGACCATATGGGGCACAGCAGGTGTTTTAGGATATAACTCAGGTTTTTGAGCACATTTTGTTATTATTGTTCATTTATTGGTTTGCTGGAAATTAGAACTGAATTTAGAAATAGCTTTAAAACAAATCTTTGCGCTTAACAAACAAAATTATTTATTTATAGACTAATTGATGTCTGTGCGTAAAGGTTTCCTTAACTAAGAGCGAATGTGAAAGTAGATCCATTATCTCTCATTCTCACGCAGTAGATGCTCTGTTTAACTGTTTTCTGTTAAAAAAACTGTTAACTGTTAACTGTTTGCTTGTGAAATGCTCATTTTTTCCACTTAGACTTACTTTGCGTCCTGTAAATAGTGAATGCGCTCTTGGCTAGACGCAGCTGGCTCTTAAAGGGAATGGGAGATGAGACTCTAATTGGTTTATTCTCAAAACACACCTATAAATCATTAAGAAAATAAACTCAACCCCTTTAGACCATGTGTTTAGATTTCACATCCTTAAATTAGCAAAAATGCGTCCTGACACACCCTGAAAGCGTTTACACCCTGCGTTTTGCACTCTGCGCATGGACCGTCAAAATAGAGCCCATTGTGTTTTTGCATTCTCAAGTTAGTAATTTCCAATAAAGATGCGCTGATATATGTTTTCAGGATGCAGCGAAATGAAAACAACTTTTTTAAATGCTGCAATCACACCGCGAGTATATACACAGTAAATATACACAGTAATAATGGTATGGATGGGATTTAATGGAATATAAACCATTACCTGATACAAACACTTTAACAAATCAGATCTGTTGTGTGCTGTGTCACGCAGTGTACTTGTTCAAGACCAACACGGGCTAGATTTTTCACACTGAACATAAATAAAACAACATAAACATACCAAAAAAAGGCATGCATCAATAAACAAACTAAGTGGAGCAATCATACAAATACTTTAAAAGTATTTATACTTTGCACATTAAAGTACATGCACTTATTGTGTAAAGTTGATCACTTTTGTAACTTGTTTTATCAATGTTTATTAAATAGTGGTAGTATTTTGTGCTCCACATTTTATTATCTCTTTAAAGTTTCATATGACTATGTACATTCATTTCCTAATTTCTGTTTATTCAACACATTTCTAAACATAATCATTTGTATTCTGACTTCAACTGTAGAGCCAGAAAGCAATATTCCTGTCATTTCTAATGTGTGCCAGGGTTTACAGGGACACGATGCCCTCTTCTGGCCACAGGCTGTCCTCACATCTCTGATTTCTGTGTTTTTCAG
Seq C2 exon
GATCTGGCTGTCGGTGCAGACGCTGAGGGACAGAAGGTTAAAGACCCCATGCGGACGCTGCTTCCTGTGCTTTTACACCAGCACGACACCACCGACAAGATCCGCGCCGTCCTGCTCTACATCTTCAGCCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142:ENSDART00000044776:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100),PF083765=NIT=FE(17.7=100)
A:
NA
C2:
PF0099518=Sec1=FE(8.3=100),PF083765=NIT=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]