DreINT0160563 @ danRer10
Intron Retention
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39427657-39428117:+
Coord C1 exon
chr7:39427657-39427766
Coord A exon
chr7:39427767-39427858
Coord C2 exon
chr7:39427859-39428117
Length
92 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCATGCCTCTGCCTGTCCAGGAT
3' ss Score
7.89
Exon sequences
Seq C1 exon
ATGTTGACATACTTTGCGGCATTTGAAGTGTTCTTTGAAGAAAATCTACCAAAGCTTTTTGCACATTTTAAAAACAACAATCTGTCCTCTGATATTTATTTAATCGACTG
Seq A exon
GTAAGTCGGATGCTTTTTGTTTCTATAAAAGTTAATTTAATAAACTTGTTTCTTAGTCTTGTGAGTTACTTATCATGCCTCTGCCTGTCCAG
Seq C2 exon
GATCTTCACCTTGTACAGTAAATCTCTCCCTTTGGACATTGCGTGTCGTGTATGGGACGTGTTCTGTCGGGACGGTGAGGAGTTTCTTTTCCGCACTGCACTGGGTATATTGCGGCTTTATGAGGACATCCTCACACACATGGACTTCATCCACATTGCTCAGTTCCTCACGCGTCTACCGGACTACATCTCTGCTGAGGAGATCTTCTCTAGCATTACCACCATCAACATGAACAGCAAGAACAAGAAATGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520:ENSDART00000133420:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(15.7=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(19.6=51.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGCGGCATTTGAAGTGT
R:
CCGACAGAACACGTCCCATAC
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]