DreINT0161337 @ danRer10
Intron Retention
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44184006-44185224:-
Coord C1 exon
chr1:44185067-44185224
Coord A exon
chr1:44184097-44185066
Coord C2 exon
chr1:44184006-44184096
Length
970 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
GTTCCTCTGGCTTGGTTTAGTGA
3' ss Score
5.85
Exon sequences
Seq C1 exon
ATCTGGCGTATGCTGTTTGGCGGGAGGTATCTGATCCTCATGATGGGGTTGTTCTCCATCTACACTGGGGCTATTTATAATGAGTGCTTCAGTAAAGGACTCAGTCCTGTTTCCTCTGGCTGGCACCTCAAACCCATGATTCAGCATTACAACTGGAG
Seq A exon
GTACTGCACACTCTTACTTTTAACCAAAAGATTCAACTAGCATCCCAATTTTGCAGTTTCAAATAACTTGTGCACCTGCAGAGTGCAAAGTAGCTTTCTGCCAATGTAAAAGGTCTACAAAGTAGGATAAAGTCGATAAAAGGTGTTCTGTTTTGACAACTCTGAGAGAATTAGTGTGATATGTACAGTATATGGCTCTGTTGATGTGTTTGGATTGGTGTTACAGATCATAGGACATTAATTTGGACAACTATGCATTACTTTGATCATTTCAATATAACATATTAAAAGAAATCCAAAAAATTATAAACATTGAGAGTTAGTTTTAATCTCGCGGCCCACCTGCAGGGTCGCTGAGGCCCAGTGGTTGAGAATCCCTGGTGTAGAGTGTAGTGGCCAAGGCACTACATGATGCTGGTGGGGGAAAAAGGTTTTCTGGCTCGCCACTTCAAAACACCCCAAAGTGGCTTATTAATATTTAGATCTGGTGAATGTGCAGGCCATGGGAGATATTTCAGCTTCCCTTGTACATCCATGATTACAACAATAAATTTGTACATCAAACCACAAGAAGCACAACATAAATTTGCAGATATAGCCATTGCTTCTGTACAAGCATCTTAAAAGCCCCATTAAAACCTTCTGCTCAGTTAACGAATGATATGGAATAAGCACAGCACAGGATGTCCTTTAATATATAGTGTTAATGACCCCGACTGACTGTCAGGAAGTTCAGGATTTCCTTAGCTTTGTGAGGCCAAACTGATTAAAAACTTTGCCTTTTTCTAGGAATCAGCCATGAGTTTTTATTAGTCTAATTGTCATTGGTGTTCAGCAGATTTTCCATTTACACATTTTGAAACTGGATTAAGTTAGGGATGAAGATTTATAAAAAAAAAACTTCTCCAACACTTCAACTTGCCCTTGTTTTACTCTCTTGTTTTGTTTTTGTTCCTCTGGCTTGGTTTAG
Seq C2 exon
TGATGAAACTTTGAGGAGCAACCAGTACCTCACGTTGGATCCTAATATAACTGGAGTATTCCAGGGACCATATCCATTCGGCATTGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835:ENSDART00000145354:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCGTATGCTGTTTGGC
R:
CGGGTCAATGCCGAATGGATA
Band lengths:
249-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]