DreINT0163190 @ danRer10
Intron Retention
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25614952-25615464:-
Coord C1 exon
chr10:25615368-25615464
Coord A exon
chr10:25615040-25615367
Coord C2 exon
chr10:25614952-25615039
Length
328 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTGACTTTGTTTGGTTTTAGATT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGTGGACCTCACAGAGTGTCAACCCTTGATGAGAGAGACCCATTTCGTTTTAGACACATGATCTCTACAGATGCCCTCCAAGTTCGCAATCTCCCAA
Seq A exon
GTAAGTATTGGTGTACTGTTCTAATTCTTTTCCCACAGCTCTATTCATGCTTTAAGAAAGAGCATAATGTATTTAACATAATAAAAGCCTTGATGACACTCGATAAGACTGCTTTTGGCTGTTAAATGTGCTCTTGCCAGAATGTTGCTATTCCCTATTGATGGAGGGGGGGTCAAAAGTTGTCCTACAGGAACTTGGGGTCTGCACTCTGGTTCACTGTCCCAGGGTTTGTCTTCCCTGAGGTTCATTAGCCGTGCACTGATCCTGAAAATGCTTTCCCACAGTTCTTTTGTTAGCTCACAGTTAACCTGACTTTGTTTGGTTTTAG
Seq C2 exon
ATTCCGAGGGCTCTGCAATGTGTGAGATCGTTCACGTGAGGTCAGAATTTGAAGGGAGACCTGAGAGGACTTTCCACATCTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430:ENSDART00000143978:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCACAGAGTGTCAACC
R:
CTGCAACAGATGTGGAAAGTCCT
Band lengths:
182-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]