GgaINT0116828 @ galGal3
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107922759-107923684:-
Coord C1 exon
chr1:107923582-107923684
Coord A exon
chr1:107922847-107923581
Coord C2 exon
chr1:107922759-107922846
Length
735 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GCTGTTTGCTTTTGCTTTAGATG
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGAGGATCACATAGAGCTTCAATTTATGAAGACTGGGATCCATTCCGCTTTCGTCACATGATACCTTTGGAAGCACTGCAGGTTCGAGCATTGGCAAGTGCAG
Seq A exon
GTAATGTTCCAGCTGCAAAAACCTGGTAATCCTTTTATCTTTGTTCTGGGGACATTCATTGTCTAACCGGTGGTTGTCCTTAGTACATGTGTGTGTGGCTCCGGGGACGTGAGAATGGAATCCGCAATCACAACATCAGTAACAACCCTGGAGAGAAATGAAGGGGCAAAAGCTCCAATTCTGTATTTTCACCTTGTCAGTTTTTTTTCTGAAGGCAGTCAAGGTTTTAGAAAACCTGAACAAAGTTGCTCCTGGCTCTGGTTCATTTTGTTCCTCTTCTGGAGACGTGAAGGAAATGTTGCAGCTGTGAAACAACAGAGCTAGTGAATTCTTTTTGTTGTAGCAGATGACAAATGGCAGTGAAGGTTATTATTTAAGACTACAAAAGTAAAAGTGGATGGAACATATAACTTAGCTGTCTGCAGAAGTTACACCTCTAAGATATGGCAATACTGGACTATATAGAGAACCTGAAAAGCCATTTTTTTCTGTTACTTTTGTAGTACTGAGGGAGTGCATATGAAGCTTTACTAGATTTTGGCCAATTTATGTGTATGCTGTTTCATTAGCCACTTGCCCACTCCTGCTTTTCATCCACGAATTAATATTATTTTCAACACATGATTTGTTGTCCCACTCAACCTTTAACAATTTTTCAGGGTTATGGAATAAGTGTTCTAACTGAAGTTAAACATGAAAGCCTGTTGTATGAAGTGCTGTTTGCTTTTGCTTTAG
Seq C2 exon
ATGCAGAGACCAATTCTGTATGTGAGATTGTCCATGTTAAATCTGAGTCTGAAGGCAGGCCAGAAAGAACGTTTCACCTTTGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.8=100)
A:
NA
C2:
PF0016924=PH=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATCACATAGAGCTTCAA
R:
TACAGCAAAGGTGAAACGTTCT
Band lengths:
190-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]