DreINT0163241 @ danRer10
Intron Retention
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49125789-49126269:+
Coord C1 exon
chr17:49125789-49125897
Coord A exon
chr17:49125898-49126210
Coord C2 exon
chr17:49126211-49126269
Length
313 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
TCTCTGATTTGTCTCCTTAGTTT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTCACAGAGATATCTATGGGACAGTTCCTCATGCATTCCTCTGTGATCTGGCTCAACCCGTTCCCATCGTTGGGCCGTATGAAAAAGGATCCCGAGCTGACTGTTTTTG
Seq A exon
GTAATGAAACCATTACGTTCGTTCTCATATAATCATATGCCAAAATAAATGTTTTATTCTCTACTTTCTCTGTTGGTCATTTTTAGGTTCATTTTTCAACAAATGCCCATATATTACCTCAAACAAACACCGAATATTAGTTCTTTTGTGATGCGGCACTGATCTTGTACTGTACACTGAGCTTTTTATAGCTTTGTGAAAGCATGTTGGACTGATTTCAGAGAGATTGGCAGCCATTCTGCAGCCTCAAAGCAAAGAATTTTGTCACATGAACACGTGTTGGACTCATAGTATCTCTGATTTGTCTCCTTAG
Seq C2 exon
TTTTTAAGAGAGCCGTGATACTGCTGTACCGGGAGAACAACAAGGTGAGGAAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780:ENSDART00000156492:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]