GgaINT0085348 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52486718-52488600:+
Coord C1 exon
chr3:52486718-52486826
Coord A exon
chr3:52486827-52488541
Coord C2 exon
chr3:52488542-52488600
Length
1715 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTCTTCCTTTCTTTTTTAGTTT
3' ss Score
12.35
Exon sequences
Seq C1 exon
GTGACTGAACTTTCCATGGGAGAACTTCTGATGCACTCTACAGTTTCCTGGCTAAATCCCTTCCCATCACTGGGCAAAGCAAGAAAAGACCTTGAACTTACAGTGTTTG
Seq A exon
GTAAGTGTCTTCCTTCATGACTCTGCTCTTTCAGATCTAAAGATGAAGAAATTAAAATTTCCCCCAAGATTAAAGCCACTACCTCCTTTTCCTGTAACCATGGGTTATCTATGCTAGACTTGCATCTGAAAGTATATGCAGAAGTGTTAGATTTCCTAATTCAAGTGAAAAATTTCCATTTAATTTGCTTGCTGCTACTGTCTGTTCTGTGAGCCAACCTTATATACTCTGTGTGTCACGTATGGAAATCAATGATTTTCAAGCAACAATATTCTCTCTAAAATAATACGGTAAATAAGTCTTTCAAATGAGGCTGGTAGGAAAATGGTGATTTATTTCACTCCTGGGAATACAGAATAACCTGTTTTACAACTGTTGCATCAAAATGTTTTGCCTGCGAGTCCTCATTCAGGTTATTTAAACCTGAAACGTGTAAGTGGATATCAGAGCACAGAACCAAAAGTTTTACTGAACAGTATACATGCTATTAATCATTTATTAACTAAGTAATCAAAAGGTTCCACTGAAACATTAGGCATTTGTCTACATCTATTTAAAATGTCTTTGGACCCAGAGAACAACTCCAGGTTCATGAAGAGACAAGTTTTCCTACGTTTCCAAGTTTCTCTAAGCATGACAAGATAGGGGGAGAGAGTGCTTTTAAACAGAGGAACAAGCGTGAACTGCTTCCACATGTTGACTTGGATGAGCTTCTCAGTGATCCAAATATGCCAGTCACTTAAGCCCAGGAAGTGGGAGTTTCCAGCAGAGTGTGTATAAGTAAATGAAGGGACTCTGGCCTGAAACCTAGCTTAGACTGCTTGTCCGCCACCTGAGAAACCTGGTTTTATTCCCAATTTAGTCTACTGCAGCTTGAAAAGTGCACTTAATATGTGGAACTGAAGGAAACTATGCCCAGCTCTAGAGTAAATGCTGTGCTCACTGTGTCTGCATCCTGGCTTCACGTAGGCATGAAAGCCTACTGTATCATCAGTCCCTCTCCCTCCCACTGGAAGGAAATATGGATGCGTGAGTAAGGATAGAGCAGAGGTATACTGCCCTCATCAAATCTGGGATCCAGGACTGCTATCCCATAGTTCAGATGCACCTTCACTGCCCCTGGTTTTCTGTTCTCTCCTTACTGACTAGGGAGAACATGCCCCTGCCTCACTGGAGGCTGAGAGATTAGATACCATTAGTGAGCCGCTCCAGTCAGATGCTGTGAAAGACAGAGAATTCCTTCAGAAGGAGAAGTAGGAATTGAGATGAATGAATGTTTCCAATTGAACAAAAGCTGGCCTGCATGAAGACTTATCATCCTTTTTCACAGTCCTCTCTTAGTACTGGCATTTCACTCCACTTGAAGGCATCCATCCAAAAGAAAACCTGGATCTTTACATCTAAACTACATCAGCTTTATTTGTTTGTGTGGAGACTTGCAGGAGCCAGGCTGCCAGTAGTTTCATAATGCAAGTGCAGAATGGCTTCATCCTAAAAGTTCATCAGAAAATCTGAGAATAGATGTTGCTACTGCATGAACAAATGTGGGATGAAAAACTCAATGCTTTAATACAGTGTAGATGCTTCCCAATCACTTTGTTTATCTCGTCTTATTACTTTTTAATATTCAGCTTCTTCAAGATAATATTTTCACTGAATATTGTATCTGCCTTTAAGAGTCTTCTTTTTTCTCTCTCTCTTCCTTTCTTTTTTAG
Seq C2 exon
TTTTTAAGAGGGCTGTAATACTGGTGTATAAAGAGAACTACAAACTGAAAAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]