DreINT0165357 @ danRer10
Intron Retention
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38783595-38784424:+
Coord C1 exon
chr10:38783595-38783737
Coord A exon
chr10:38783738-38784271
Coord C2 exon
chr10:38784272-38784424
Length
534 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
AAGAGTGTTTTTGCTCACAGGGG
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCTCTTCCTCAGCAACCCTACAAGAGGCCAAAATCCAGCTGATCGACAGCACGATTTGTAACAGCCGGCCTGTGTATAACGGACTGATCACCGACACCATGATCTGTGCTGGAAAGCTGGCAGGCGGCGTGGACTCCTGTCAG
Seq A exon
GTCAGAAACGCAAACAATAGCTGCCCCATCAGATCTGTAAAGCTGATTATGAACTCTTATGAACTTATTTTGGTTCATTTATTTCTAGCAACATCTGCATTAAAAACTGACAGGCAGCAATTAAAATATCATTACCACATGCAGGGTTCTGATTGGCTGATGACTATTCTTGTGCAGTTATTTTCAGATAAATGCACAGCTAAAGTAGTACCAGGCAGGTCTTGACCACATTACAGGTTCATATCAGTACGCTGAATGATTTCAGATATTTCATAGCTATAACAGTCGGAAATCACATTACAACGAAACCGAATGCTTTAAGTTAGTTGTGTAAAAAGTGTGTTTGTGAATAAATTGATGGCCCTTCGTCAGTTAATCTTTGCATATAATGAATTGCATTAATGGCCGTTATTATTGTGCAATTCTAAACCAAACCTCTAGACCTGCTCATGATCCTCTGCCAATTCTTATGTAGAGCAGTGTAAATGTACTGTATATACAGTAGATGTGGATGAAGAGTGTTTTTGCTCACAG
Seq C2 exon
GGGGACAGCGGTGGTCCTCTGGTCACCAATGTGCGCTCTCTCTGGTGGCTGCTGGGAGACACGAGCTGGGGTGATGGATGCGCTGTCAGAAACAAACCCGGAGTCTACGGAAATGTGACCTACTTCCTTGACTGGATCTACCAGCAAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686:ENSDART00000163099:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCCTCAGCAACCCTAC
R:
CCGCATTTGCTGGTAGATCCA
Band lengths:
296-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]