MmuINT0162706 @ mm9
Intron Retention
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97788630-97789345:-
Coord C1 exon
chr16:97789203-97789345
Coord A exon
chr16:97788783-97789202
Coord C2 exon
chr16:97788630-97788782
Length
420 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TAACTTGCTGTGTTCCCCAGGGA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GGAAGACCTCGGACGTGTTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGTAAATACATATACAACAACCTAATCACACCAGCCATGATCTGTGCCGGCTTCCTCCAGGGGTCTGTCGACTCTTGCCAG
Seq A exon
GTAATTGTGAGTTTTTATTTAACCTTTGAATATGCAGTTCCCACTGAGCCCCTGGGAGACATGGGGGCTCTTCTGGGATCAGAGATACCTCTCAGGGACATGGAACCAGCTGGGAACAGCTGTGGGGAGGGATGTGGCCACTGGCAACATTTATACCTCTGGCAGAAACCAGGGTTGGGCATGCTATGGTCTCCAGAGAAGCTTTAGCTTGGCACAAGTGTTGGTGTGGTTGAAGTGTGTTCTGCCATGCATTTGCTAACTGTAACTGCCATGCACCAATATAACCTTTTGGATTATGTCTCTGTGACCATTACCACCTTCAGGGGAGACATATCCATACCCTCTCTCATATCCAGTGTCCTCTCTGCATATACCGTTTAGTGTGCCTTTTTCTTCTCAGTAACTTGCTGTGTTCCCCAG
Seq C2 exon
GGAGACAGTGGAGGGCCGCTGGTTACTTTGAAGAATGGGATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCACTCAGACCTGGAGTATACGGGAACGTGACGGTATTTACAGATTGGATCTACCAGCAAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-Tmprss2:NM_015775:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCTCGGACGTGTTGAA
R:
CCTCATTTGCTGGTAGATCCA
Band lengths:
295-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: