DreINT0165398 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18238789-18241102:-
Coord C1 exon
chr15:18240421-18241102
Coord A exon
chr15:18238934-18240420
Coord C2 exon
chr15:18238789-18238933
Length
1487 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TATCAGTGGTTATATTACAGAGT
3' ss Score
3.53
Exon sequences
Seq C1 exon
TAAATAAATGGAACTTCCAGTTTAAAATAGGTCTCCAATAGGCCTTCAGTTCACTACAGATTATTTCTTGATGTTAAAACTCAGTTGTAAGTTTAATATAGATGGATAAATATTTTGTACGTGACTGTCAAAAGCTGTAAGTATACTGACTTTCTCTACTGAGTATGTATAATCTTTTAGTCTATTGTTAACAAATAAAGACAACCTGCAACACATAGAAACTTTTTTTCTGGTAATCACAAAAGCTCTTCATGATTCTGTTGTTATGCTTAAATGAGACTTGTCAGCATTCCACAGGTCAACTTTGTTTCCCAAAAGTTGTGAACTGTCAGGTTCAGAGCTCTACGGCTCAGCGGATCCTCCTCTTGGGCAGGTGAAGGTGGGGCTACACAGTCTGTATCCTATCAGTGACTGAGCGATTTCTTTGGAGATGTTTGGCTCTACAGAGGGCAGTTTAGGCAGCCATGACAGGCCCCATGACCCCCTTGGTAAAACAACGGGTTCATTCTTTGCTCCGCTGCTGACCTCATTGTCTCTTTGTGAAGTGAAAATCCAGCGCTGCATTCAGCTCAATGGTCTGACAGCTGCTGGTGTGGAGCATCTCTGCTGTGATGGAGGTAAGTTGATGAGAGAGTCCAGCAGCTGCTCTCAGGAAATCCCGAATCCCAACAACGAAAGCATG
Seq A exon
GTGAGTAACTTCTAGCAAACTCGCATACAGAAACATTACACTTTTCAAGCTGTTTGTGCCGTATTGTATGTGAATGACAGACTATTTCCTGTCATGAAAAATTGAACAGTTGCTGTTAGAATGATTCTAGTTGAGAACTTGTTTATGTTTACAGAATCGTGTATGCTAACATGAAGGATTTATGGCTATATACTTGAAGTCAGAATTATTAACCCCCCTGTTTATTTTTCTCTAATTTCTGTTTAACGGAGAGAAGATTTTTTTAAGCACATTTCTAAACATAATATTTTTAATAACTCATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTACATAATATTTGACTAGATATTTTTCAAGACACTTCTATTCAGTTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTTAACCAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATAATGATGTTTGTTCTGTAGACTATCGAAAAAATATTTAGCTTAAAGGGGCTAATAATATTGACCTTACAATGGCTTTTATTCTAGCTGAAATGAAACAAATGACTTTCTCCAGAAGAAAAAATATTATCAGACACACTGTAAAAATGTCATTGCTTTGTTAAACATCATTTGAAATGTAATTAAAAAAGAAAAAAACTAAATTCAAAGGGGGGCTAATAATTCTGACTTCAGCTGTGTATAATAATTATATAAACAAATCAAAGTGTTGTACATTTCACAGAATTCACAGAATTTTGAGCCAGTCTTTCAGTCTATTTGTTAACTTTTTTATATTACATTAATTTAAGTAATAATAATATGTACAATATACAGTAGCTTGAAAAGTAATCTTGTAAAGTTTCATCTGTTTAAGCAGATTTATTATATGATAGTCTTTACCGTTGTTTACCAAACAAGTGGTTCTAATTGGATTTGCACTGTAAAACTTACATATTTAAAAGTTAGATATAGTTTAATGTCATTAGTTAAGTTTCAAGTTACTAAATAAATCAATCAATACAATTTTGTAGATTTTTCTTTTTTACAAAAATGTCCTAAAAAAACAAAAAAACAAAGGAGGTAGAATTCAACATTATCACAATTGTTTTGTTCAGTTGATAGCACAATCTAACAACTTATTACAATCTCTTTAGATTTGACTGTGTATTTCTAAAGGGACATTTACAGCAAAACAAATTCACAAGTGTTGTATTATATCTGAATGCTTAAATAATAAAAGCTGACCCCATATACTGGATCACATTTGAAAGTTATTCAGTTTTCTAAGTAACATTTACAACTTCCTGCTTGTTTTTACATAAATTGGATGTGTGTGGTTATTTTCATGCTATTTTCATATAAAACAGAGCAAGCAGAATTACTGTTCTGAACACAAAAGTACATATTGCTTATTTTACTTTAAAACGTATCAGTACCTTTTTAATCTGACACTGCAGTTGATCATATCAGTGGTTATATTACAG
Seq C2 exon
AGTCTCAGTAGAGATGCGGTGGCAGTGATTGAGAACCCTGTAGTGGTCAGACAGTCTTTTCATCCAGAGAGTCTGCAGGTGGACATGCTCGAGTCAGACCAGAATAACCACAGGTGCCTCAGAGAGCTGCAGTTTCTCCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGCTACACAGTCTGTA
R:
GGGTTCTCAATCACTGCCACC
Band lengths:
342-1829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]