RnoINT0057455 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50190350-50191330:+
Coord C1 exon
chr16:50190350-50190475
Coord A exon
chr16:50190476-50191218
Coord C2 exon
chr16:50191219-50191330
Length
743 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TAATTTATTTTTTTTAAAAGAAC
3' ss Score
4.61
Exon sequences
Seq C1 exon
AAGTTCCGCCCTTGTACTTCCTGTCCCGGCTATTGGCTGTCAGATCTTTACTATAACCAATCAGCAGTAAGACAACGCTGGAACATCTCTTTGGTTGCCTGTTGGCAATATGGGCTGTTTGGGCAG
Seq A exon
GTATGGAAGGACAAGCACTTACAAATCGGAAGCTGGTGATAAGCCATAGAAATGATGGTGCCAAAATCTTGCCGGAACTTAGCTCTTTACAGTATGGTAATCAACAATTGAAAATACAGAGACATACCTTAATACAATGGAAGGAACGTCACCCCAACACTGCCATGTTTGCTTTACCTACCTGTATGTAATCACAGGTAAATACTGAAAGTGATTTTAAAATACCATAGCCCTGTACCTCTAAATACTTCAACACGAATTTCACAGTAAGGAAACTGTAAGAAGCTTAACAAAGTTAGACATACTTGAAATGTTCATTTCAGCTGTTAATTAAATTCTAGTCAAATTTTGCAGGTTCCCTATGGCTATATTTTCCCTCTCTACTCACATTTAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGGACAGCACAAAAATGGTAGGTTTTAAACAACATTTTAGCAATAGGACAGAGTTCATCCATTCCTCTTCATGTCCTATTGGAAAGGAGGGTCATATGTGTTCTTTTAGATGTAGGGATGTTGTAATCAAAAGCAAAGTCGAATCTTGCTAAGCAAACATTTGTTTTGCCAGGAAACCCAGTCATTTGTTTCCTACTCTTTGACCTTAGGGTCCACACTTTGAAAGCATTAATTACCGCTGAATAATGCTATTTTAATTTAATTTATTTTTTTTAAAAG
Seq C2 exon
AACAGGTTTGCCTGCATCCTGAAGGACAGTCTCACAGAAACATTGCCGATGGTACACATGACAGGAGCGGTTTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGCCCTTGTACTTCCTG
R:
CTGAGGGCATTGCTTGAAGGA
Band lengths:
226-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]