DreINT0165405 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18234618-18235737:-
Coord C1 exon
chr15:18235602-18235737
Coord A exon
chr15:18234732-18235601
Coord C2 exon
chr15:18234618-18234731
Length
870 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAAT
5' ss Score
2.23
3' ss Seq
CAACTAGTCTCTCTTTTTAGATT
3' ss Score
8.59
Exon sequences
Seq C1 exon
TGTTTTACAGGATCAGTGCTGAGAACTCACTTCTGGAGATCCAGCTGGAGAAGCTGCAGACGTGGCTGCCTGTTTGTTTCGAGAGGTGGAACTCGTCTCTGGGAACACTCGTATGTCGACAGCTGGGCTATCTGAG
Seq A exon
GTCAATCACACACACACACACACACACCTTCAGCTCTCAGCACCTTTCATTTCACTAGCAGCTGTGTCTGTTTTCTGTAGGTCAACCATTCATAGAGCGTCTGTAGTGTTGAAATGTTCTTTGAAGTTAGCTCTGATTCAAAGCATGACATACAAGCTTTTCAAAGATTATTAAAGAGATGGTTCACACACAAATGAAAGTTCTGTCATCGTTTACTCACCCTCTTGTCACTACAAACTTGTACAACTTTATTTCTACTGTGGAATGCATATACCATACTGTAGGTCATATTTTGAAGGGTACTGAAGTACTATGCAAGTGTGTGATAATAATAGTAAATAATTCCTTACATTTATATAGTTCTTTTCTGTACACTCATGTCGCTTTACACATTTTTTGGCCGGAATCTCCTCATCCACCACTAGTGTGCAGCATCCACCTGGATGATGCAAAGGCAGCCATATTGCGCCAGACCACACACCAGCTGATTGGTGAAGAGGAGAAAGAGTCATGAAGTCAATTATGATATGGGGATGGTTAGGTGGCCAGTTGGCAAATTTGGCCAGGATGTCTCTTTTTATTAATAGAGCTCTAGCTTTGTGTATACGACCAAAGCAACTTTCAAGAAAAGTCTACCACATTTTGATTTTGGATACATGGATACACAAAATGTTTTGCCTTTTTGCATCTCAAATTGTGGAGCATGGTTTAATCCCCAGGGAAGTAAAAAAAAAATATTTAAATTATATATATATATATAATTTTTTTGGAATGACATGAGAAAAAATGATTGATGCTGAAATGCTATATTTATAGAGTTTTATAAAGAGTGGTTAGACTTATGATTGATCAACTAGTCTCTCTTTTTAG
Seq C2 exon
ATTATCAAAGCACAAGGGAGTGAATCTGACTGATATCGGGCCGAATTATACAGATGGATTTGTCCAAATCACCTCAGAATACCAAAGCAATTTGGAGAGCTTATGGCGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
NA
C2:
PF154941=SRCR_2=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAGGATCAGTGCTGAGAACT
R:
CTGAAGCGCCATAAGCTCTCC
Band lengths:
246-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]