MmuINT0162746 @ mm9
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48917107-48917560:+
Coord C1 exon
chr9:48917107-48917242
Coord A exon
chr9:48917243-48917446
Coord C2 exon
chr9:48917447-48917560
Length
204 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTTCTCTTCTTCTGCCCAGGCT
3' ss Score
8.1
Exon sequences
Seq C1 exon
TATCTTTCAGAATAAATGGAGAGGATCTTCTGCTTCAAGTACAAGTAAGAGCTCGGCCAGACTGGCTCCTGGTCTGCCACGAGGGCTGGAGCCCCGCCCTGGGCATGCACATCTGCAAGAGTCTTGGGCATATCAG
Seq A exon
GTAACAACCAGACTTGCAGGGCTGGATGGCATGTGGGGGGGGGGGGCTGGAGTTGGGACTATGCCTTCAGAAATCGCCTTCATGCTCTGGCCCATTCACAGTGCTGTCGCGTCTGTCTCACGCACAGTGTGGTTCTGACCTCCTGACCTCACTCATGCCTTAGTTGGAAGCCGACTTCCTCCTGTTTTCTCTTCTTCTGCCCAG
Seq C2 exon
GCTTACTCAACACAAGGCCGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAACTCTCTGCTAGACCGGGAGGCCTTGTAGAGGAGTCATGGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-Tmprss5:NM_030709:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(39.8=84.8)
A:
NA
C2:
PF154941=SRCR_2=PD(48.7=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATAAATGGAGAGGATCTTCTG
R:
CTGGGTTTCCATGACTCCTCT
Band lengths:
244-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: