DreINT0165406 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18233049-18234731:-
Coord C1 exon
chr15:18234618-18234731
Coord A exon
chr15:18233093-18234617
Coord C2 exon
chr15:18233049-18233092
Length
1525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CCTTTTTCTTACTACTCCAGGGG
3' ss Score
9.32
Exon sequences
Seq C1 exon
ATTATCAAAGCACAAGGGAGTGAATCTGACTGATATCGGGCCGAATTATACAGATGGATTTGTCCAAATCACCTCAGAATACCAAAGCAATTTGGAGAGCTTATGGCGCTTCAG
Seq A exon
GTAATCCAAAAAAAATACAGATTGTTTTAGTTGTCATATTAACTGACAGTTGCTTTTCTAAAACCTTAGCTGACACAAATTTAGTATATTGTAAGGGCCTTTAAAGTAAAAGTTCACCCAGAAATGAAAAAAGTGCTGTTGATATATTCATCCAAAGGCCATGCAAGATGTACAGCAGGTAATCTGTCTATTCACTAGAACATATAGAACAAATATTTTTAGTGAAACAATTTTAGTGTTCCTTGCTTTTTCATAAAAAGCAAGTCAATAAACATATACAGGCAACACTAAATTAATACGTAAAACAAAAATTAATATACTTGATGATATACTGAGGTCTTAGGAATAGAATGTTCTCTGTTTTATATAGACATGCATATTGTATAAAAACATCTATGTCTTTCTTCCATTGTTAACAAATAATGTCTGTCTGCTCACATGTAAATTCCCAAATAGCAGGCAGTAATCGGCCCGAGCTCGGCTGCCCTCAGGCGCACTCATTATGTGACAGAAAACTCACGCTTCAGACTATGAAAAGCCAGCAGAACAGGGGTGTCAAACTTAATTTCTGGAGGACTGCAGCCCTGCAGAGTTTAGTTCCTGTCGTGCTTCAACACACCTATTGATATACATCAAACTAGCCTAAGGCACTCAATTAATTATTTTGATCAGGTGAGTTTAATTAGGGTTGAAACTAAACTGTGCAGAGCTGTGGCTCTCCAGGAACCTTTGACAGATCATAGATTATGATGTACTGTAGATCATAGGACATAATGCAGTAAATAACGTTTATTTTCTTGCACAAATTTGTCATTTCACTTCATAAGACCTTGATGTATTGTCTGTACATCTGGATATCTGCCTGTATATATTTAAAAATCAATGTGCCTGTAACCTCTAACTTGCATTTAACAAAAGATCACAAAAGACTTTATTATTATTTGATTTTAGCAAAAAGAATCTTTAATGTTGTACAAAAAACAAAGGCTGCGTCCAAAACCGCATACTTCCATACTATATAGTATGCTAAAATCAGTATGCGAGCCGAGTAGTATGTCCGAATTCATAGAATTTGAAAAACAGTATGCGAGAAGTACCTGGATGACTTACTACTTCCGGCGAGATTCTAGAGTGCGCATCCCATGCATGCTGCACTATCCCATGATGCCCCGCGAGCGAATTCATGAATGGGAGTAAAGCGACGCAATTGACGCAGGCAGGTCACGTGACCATGACAAAATGGCGGCTGTAGTACGTCCGAATTCCATTCATACTTTTCACATTCATACTGTATAGAACATACTTTTCTAACAGCCGAGTAGTACGTTTAAATTCAAATGCAGTACCTACTGAGTAGTAGGCGGTTTCGGACGCAGCCAAAGTCTTCTACTTGGTGTACAGTATGGCCTTAGGGGAAAGTAAAAGCAAATTGTCAATTTTAGGTAAACTCTCTTTACAAAAGCCCTGTTTATGTGAAATTGAAGGCCATAGACACTCACACCCTGCCTTTTTCTTACTACTCCAG
Seq C2 exon
GGGAAGCTGTAGTACAGGAAAGGTTATAGCACTAAAATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]