RnoINT0153416 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53420748-53423039:+
Coord C1 exon
chr8:53420748-53420861
Coord A exon
chr8:53420862-53422995
Coord C2 exon
chr8:53422996-53423039
Length
2134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGAACACCCCTATTTTGCAGCAC
3' ss Score
4.53
Exon sequences
Seq C1 exon
GCTCACTCAACACAAGGCAGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAGCTCTCTGCTAGACCGGGAAGCCTTGTAGAGGAGGCATGGCAGCCCAG
Seq A exon
GTAGGGCTTCTGTAGGTTAGGTGAGTGGTGGGCAGTCTAGAAAGATCTTCCTGCAGGGCAGCTTGATGGTGAGGACATGGGCAGAGAAGACCATTTCCCAGTCACAGGCAACAAACCCAGGTCACATGCCCTGTCATATGATATCTACCTCACCCAAGAAATGCAAGGCTGGGTATGTGGCTCAGACGTTGTAGAGGGCTTGCCTAGCACACACCAAGCCCTTGGTTCAATCCCCGGTACTGAATAAACTGGGAGGTATTGTTGCTAAAATTCTGAGCAGGAGGTAGAGGCAGGAGGGTCAGCAAGGTCATCACAACTATATACAGAGTTTGAGGTCAGCCTGGGATGCAGGAGACATATCTCAAAACAAACAAACAAACAAACAAACAAACAAACAGCCAAAACCCACCCCCCAAGATTGTTAGTTCCTGGAACAGGATTTAGAAAGGTCCTCTTGCACCCCCTTTCTTGGCTGTGTGTTGCTATGACCATACATGTGAAAGGCAATGTAAGGGAAGAAAGGCCTCTTTGCTTCACAATTGTAGATGGTTCAGCCAGTGATGGCTTGGTTCCATGTGCTACATCAGAGCACCATGTTGACAGGAATGGGTGTAGGAGGAGGCTGCTTATGTGGACATAAAAGGGACTGGGCCAGATTTAGGATAAGATATAACTCAAGGACATACTCCTGAGATCCGCTTCCTCTAGGTGGAAAAGCTCCAGAACTTCTAAAAACAGTGCCCTGGGTTGAGGACCAGGTGCTTTGCTGGAGAACTTTTGTGGGTCATTTTGTATTCAAACCATAATTCACTTTTATGTACACTGTAGCTGTCTCCAGACACACCAGAAGAGGACATCGGATCCCATTATAGATGGTTGTGAGGCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCTAGCCCTTCATAATTCACTTTTACAGGTAGAGAAACTGAGGCTCAGTGAGGTTAAACAACTTTATCCAAGGCTTTATCCCGATTGACTAATAAACGGTCAATTTGGGGGCCAGGCTCCTGATGCCAAGTCAGGGACTCCTGTGGCTAGGCTTTGCTTGTATAATTCTGCTCTCTCAAGAGAAAATGAGAGCATCTGAAAGAAGGGGACTCAGGATGGACCAAACCTCTTACTCTACTCTAGGCAGCACAGGCTGGGAGGTCTTTGGCCAGCTTAGGCTCCTTCAAACTGCCGGAAGCCTCAGGGAGGGTGCAGGCAGATGCCCCATCTGTGCTCTGGAGCTATCTCAGCCTACTTGCTCAACTTCTTTCAAGGCTCAGCTCCATTCTTAGGAATGCACTGGAGGCAGAGCGAGTGACCCCAGCTGCCCCTTTTCCTCTGTGGGATTCCCAAGTCCCCCAGGAGGGTAGAAGGGCTACAGGGTTAGGAAAATTGAAGCCAAGTGGACCAGGGAGTGGGCTGCTGGAGGGAAGAGACAGGAAGGGCAAGTCAAGAATGTCAGATCAAAAGGCAGTTGAGTTTTATGCGAAAGGGCAGGAAGGAGCACAAAAACAAGAGTGGGCCTGGGACAGAGAAGATGCTGGGCCTGGAAGAAGCCTGGGTGGAGGGCTCTTGTCACTCACAACAGCATGGCCATTCATGAACATCTACTTACTCAAGGCGCATGGAAACCACTGGGTTTTCTCATTTGTCAATTCCTGGACCTTATCCAAGCAGATCTTCCAGGACTATGAATGCTTTCTGTTTCCCTCTGATACTGGGGTGCAATGGGCAGCCTGCTGTCCTGGAAGGGCCTGGTTGTTTGTGAAGGGTGGGAGAAAATGATAAGAATGGTGGCATCATAAGGTTGGGACTACAGGAAGGCTTTAAGAACGATAAAGCTAGGCTGATTGTTGTGGCACAGGCCTGTAACCCCAGCACTTGGGAAGCTGTGGCAAGGTCAGGCCATCCTTGGCTATAGTGTGAGTGTGGGGCCAGCCTGGGTCCCGTAATACACTGTCTTAAGAAAGCAAAGCAAAACTGTGAGGAACCCCCTGACCACTCCTCATGCCCTTGGGTGTACATGGCCGTTATGTGGCACTGCCTAGTGTCTTAGGAACACCCCTATTTTGCAG
Seq C2 exon
CACTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]